NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37263.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37263.2 Public Mus musculus 16 Nde1 23 108 98 CCDS HistoryNCBI Gene:67203Re-query CCDS DB by CCDS ID:37263.2Re-query CCDS DB by GeneID:67203See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 37263.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37263.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023359.12 ENSMUSP00000023359.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023359.12Link to Ensembl Protein Viewer:ENSMUSP00000023359.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023359Re-query CCDS DB by Protein ID:ENSMUSP00000023359
Original member Current member NCBI NM_023317.2 NP_075806.2 Accepted alive Link to Nucleotide Sequence:NM_023317.2Link to Protein Sequence:NP_075806.2Re-query CCDS DB by Nucleotide ID:NM_023317Re-query CCDS DB by Protein ID:NP_075806Link to BLAST:NP_075806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075806.2 344 Q9CZA6-1 344 100% 0 0

Chromosomal Locations for CCDS 37263.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 14169493 14169575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14170338 14170491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14175291 14175439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14183476 14183612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14185694 14185873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14188313 14188404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14190087 14190232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 14191718 14191811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGAGGACTCGGGAAAGACCTTTGAATCAGAGGAGGAAGAAACAAACTATTGGAGAGACCTGGCCATGA
CCTACAAACAGAGGGCAGAGAATACTCAGGAAGAACTCAGAGAGTTCCAGGAAGGAAGCCGAGAATACGA
AGCTGAATTGGAGGCTCAGCTGCAGCAGATTGAAACCAGGAACCGGGACCTCTTGTCAGAGAATAACCGC
CTTCGCATGGAGCTGGAGTCTGTGAAGGAGAAGTTTGAGATGCAGCACTCAGAGGGTTACCGGCAGATCT
CAGCCTTGGAGGATGACCTGGCGCAGACGAAAGCCATTAAAGACCAACTGCAGAAATACATTAGGGAACT
GGAACAAGCCAATGATGACCTGGAAAGAGCCAAACGAGCCACAATCATGTCCCTGGAAGACTTTGAGCAG
CGTTTGAATCAAGCCATTGAAAGAAATGCCTTCCTAGAGAGTGAGCTGGATGAGAAGGAGAATCTTCTAG
AATCTGTGCAGAGGCTGAAGGATGAAGCCCGAGATCTGCGGCAGGAATTGGCTGTGCAACAGAAGCAAGA
CAAGCCCCGGACACCCATGCCAGGCTCAGGGCAAGCCAAGAGGACAGACATGGCTGTGCAGGCCACAGGC
TCTGTACCGTCTACTCCAGTAGCTCACCGAGGACCTAGCTCTGGTTTGAACACACCAGGAATGTTCAGAC
GTGGTCTGGACAGCTCCACTAGTGGGACGCCACTCACACCTGCAGCCCGGATATCAGCCCTAAACATCGT
TGGGGACCTGCTTCGGAAAGTTGGGGCCCTGGAGTCCAAGCTAGCATCATGCAGGAACTTCATGTATGAT
CAGTCCCCAAGCCGGACAAGTGGGCCAGCCTCAGGACGAGGAACCAAAAACAGAGATGGTGTTGACAGAA
GGCCAGGCAGTACCAGTGTGGGCGATAAAGGGTCAGGAAAACGCTTGGAGTTTGGGAAGCCAGCCTCAGA
GCCAGCATCACCAGCGCTACCATCCGCCCAGGGTGTGGTCAAGCTTTTGCTTTAG

Translation (344 aa):
MEDSGKTFESEEEETNYWRDLAMTYKQRAENTQEELREFQEGSREYEAELEAQLQQIETRNRDLLSENNR
LRMELESVKEKFEMQHSEGYRQISALEDDLAQTKAIKDQLQKYIRELEQANDDLERAKRATIMSLEDFEQ
RLNQAIERNAFLESELDEKENLLESVQRLKDEARDLRQELAVQQKQDKPRTPMPGSGQAKRTDMAVQATG
SVPSTPVAHRGPSSGLNTPGMFRRGLDSSTSGTPLTPAARISALNIVGDLLRKVGALESKLASCRNFMYD
QSPSRTSGPASGRGTKNRDGVDRRPGSTSVGDKGSGKRLEFGKPASEPASPALPSAQGVVKLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH