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Report for CCDS36895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36895.1 Public Mus musculus 14 Ddhd1 23 108 98 CCDS HistoryNCBI Gene:114874Re-query CCDS DB by CCDS ID:36895.1Re-query CCDS DB by GeneID:114874See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087320.12 ENSMUSP00000084577.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087320.12Link to Ensembl Protein Viewer:ENSMUSP00000084577.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000087320Re-query CCDS DB by Protein ID:ENSMUSP00000084577
Original member Current member NCBI NM_001042719.2 NP_001036184.1 Accepted alive Link to Nucleotide Sequence:NM_001042719.2Link to Protein Sequence:NP_001036184.1Re-query CCDS DB by Nucleotide ID:NM_001042719Re-query CCDS DB by Protein ID:NP_001036184Link to BLAST:NP_001036184.1

Chromosomal Locations for CCDS 36895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 45595483 45595664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45599102 45599185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45601565 45601756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45602639 45602891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45605053 45605202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45608938 45609013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45610492 45610754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45614163 45614269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45616530 45616636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45619269 45619416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45620712 45620840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45622841 45622942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45629580 45629753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45657222 45658011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGAACTACCCGGGCCGCGGCGCCCCACGGAGCCCCGAGCGTAACGGCCGCGGCGGCGGTGCCTGGGAGC
TGGGCTCGGACGCGGCGGGCGTGTTCGGCGGCGGCGGCTGCTGCTTCGAGCACCAGCCGGGCGACAGCGT
GCCGCTGTCGCTGCTGCGCGCCGAGCCGCTGCACCTGGCACCGGGCGCCGACGACCTGAGCCACCTGGCT
CTGGACCCGTGCCTCAGCGACGAGACCTACGACTTCAGCTCGGCCGAGTCCGGCTCGTCGTTGCGCTACT
ACAGCGAGGGCGAGAGCGCGGGCGGCGGCAGCTCTTCTTCGCCTCCGCCGCCGCTCGTCGCCCAGAACTC
GGGGGGCGGCGGGGCGGCGGGAGGGGGCCCCGGGGACAGGAAGCGCGCCCGGCCCGGCGGCGCAGCCGCC
CGGCACCGCTACGAGGTGGTGACGGAGCTGGGCCCCGAGGAGGTGCGCTGGTTCTACAAGGAAGACAAGA
AGACCTGGAAGCCCTTCATCGGCTACGACTCTCTGCGCATCGAGCTCGCCTTCCGGACCCTGCTGCAGAC
CACGGGCGCCCAGGCCCGGGCGGCGGGCCGCGATGGAGACCGGGTGTGTGGCCCAAGCTCCAGCTTCGGG
GAGGAAGACGAGGAGGACAGCGCCTGCGGCTTCTGCCCGCGCGCGGCGGGGCCTGAGCCGGAGATGGAGG
AGCTGGTGACCATCGAGCCGGTGTGCGTGCGCGGCGGCCTCTACGAGGTGGATGTCACTCAAGGAGAGTG
CTACCCGGTGTACTGGAACCAAGCTGATAAAATACCAGTAATGCGTGGACAGTGGTTTATTGATGGGACG
TGGCAACCTCTAGAAGAAGAAGAAAGTAATTTAATTGAGCAAGAACATCTCAGTTGTTTTAGGGGTCAGC
AGATGCAAGAAAATTTTGATATTGAAGTGTCAAAATCCTTAGATGGAAAAGACGTTGTCTACCACCTCCC
TCCCTTCTCCCTCCCTTCTCTGTTCAAATGGAGAGGATATAAGGAGAGCACAGATGCCACAGGTCTTAAG
CGAAAGCGTTCCCAAGCTGTTCACAGTTTCAAGCTGAGTCGGAACCACGTGGACTGGCACAGCATGGATG
AAGTCTATCTCTACAGTGACGCAACAACATCCAAAATTGCGAGAACCGTTACCCAAAAACTGGGCTTTTC
TAAAGCCTCCAGCAGTGGGACCAGACTGCACAGAGGTTATGTAGAAGAAGCCACACTGGAAGACAAGCCG
TCGCAGACTTCTCATATCGTGTTTGTTGTGCACGGCATTGGACAGAAGATGGACCAAGGAAGAATCATCA
AAAACACAGCCATGATGAGAGAGGCTGCAAGGAAAATGGAAGAAAAGCATTTTTCCAACCATGCAACACA
TGTTGAATTTCTGCCTGTTGAATGGCGATCAAAGCTTACTCTTGATGGAGACACAGTTGATTCCATCACT
CCTGACAAAGTGCGAGGCCTGAGGGACATGCTCAACAGCAGCGCGATGGACATCATGTACTACACCAGCC
CACTCTACAGGGATGAGCTAGTTAAAGGCCTTCAGCAAGAGCTGAATCGATTATATTCCCTTTTCTGTTC
CCGGAATCCAGACTTTGAAGAGAAAGGGGGTAAAGTCTCAATAGTGTCCCATTCCTTGGGGTGTGTAATC
ACTTATGACATCATGATGGGCTGGAATCCAGGTGGACTCTATGAGCAGCTGCTGCAGAAGGAGGAAGAGC
TGCCCGACGAGCGGTGGATGAGCTATGAAGAGCGGCATCTTCTTGACGAGCTCTATATAACAAAGCGACG
GCTGAGGGAAATAGAAGATCGGCTGCACGGATTGAAGGCGCCATCCATATCACAAACACCTGCCTTAAAA
TTTAAGGTTGAAAATTTCTTCTGTATGGGATCTCCGCTAGCAGTTTTTTTGGCATTACGCGGCATCCGAC
CAGGAAATTCTGGAAGTCAAGACCACATTTTACCTAGAGAGATCTGTAACCGCTTACTAAATATTTTTCA
TCCTACGGACCCAGTGGCCTACAGATTAGAACCGTTGATTTTGAAACACTACAGCAACATTTCTCCAGTC
CAGATCCACTGGTACAACACTTCAAACCCTCTACCTTATGAGCATATGAAGCCAAATTTTCTCAACCCAG
CAAAAGAACCTACCTCAGTTTCAGACAGTGAGAACATAGCAGCTATCCCAAGCCCTGTGACCTCCCCCGT
CTTATCTCGGCGCCACTATGGAGAATCTATAACTAACATTGGCAAAGCAAGCATATTGGGGGCTGCTAGC
ATTGGAAAGGGCCTTGGAGGAATGTTGTTCTCAAGATTTGGACGTTCTTCAGCATCACAGCCGTCTGAGC
CATCTAAAGACTCACTGGAAGATGATAAGAAGCCTTCAGCTTCACCCTCTACCACCACCGTGGCAACGCA
GACCCTGCCGCACAGTGGCTCCGGCTTCCTCGACTCCGCATATTTCAGACTTCAAGAATCGTTCTTTTAT
CTCCCACAACTTCTTTTTCCGGAAAATGTAATGCAGAGTAAAGATGATAGCCTCGTGGAACTGGAACACA
GGATCGACTTTGAACTCAGAGAAGGCCTTGTGGAGAGCCGCTATTGGTCAGCCGTCACGTCGCACACTGC
CTATTGGTCATCCTTGGATGTCGCTCTTTTTCTTTTAACATTCATGTACAAACACGAGCATGATACCGAG
GCCAAGCCCAGCCTAGGTTCACTCTGA

Translation (918 aa):
MNYPGRGAPRSPERNGRGGGAWELGSDAAGVFGGGGCCFEHQPGDSVPLSLLRAEPLHLAPGADDLSHLA
LDPCLSDETYDFSSAESGSSLRYYSEGESAGGGSSSSPPPPLVAQNSGGGGAAGGGPGDRKRARPGGAAA
RHRYEVVTELGPEEVRWFYKEDKKTWKPFIGYDSLRIELAFRTLLQTTGAQARAAGRDGDRVCGPSSSFG
EEDEEDSACGFCPRAAGPEPEMEELVTIEPVCVRGGLYEVDVTQGECYPVYWNQADKIPVMRGQWFIDGT
WQPLEEEESNLIEQEHLSCFRGQQMQENFDIEVSKSLDGKDVVYHLPPFSLPSLFKWRGYKESTDATGLK
RKRSQAVHSFKLSRNHVDWHSMDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGYVEEATLEDKP
SQTSHIVFVVHGIGQKMDQGRIIKNTAMMREAARKMEEKHFSNHATHVEFLPVEWRSKLTLDGDTVDSIT
PDKVRGLRDMLNSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVI
TYDIMMGWNPGGLYEQLLQKEEELPDERWMSYEERHLLDELYITKRRLREIEDRLHGLKAPSISQTPALK
FKVENFFCMGSPLAVFLALRGIRPGNSGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPV
QIHWYNTSNPLPYEHMKPNFLNPAKEPTSVSDSENIAAIPSPVTSPVLSRRHYGESITNIGKASILGAAS
IGKGLGGMLFSRFGRSSASQPSEPSKDSLEDDKKPSASPSTTTVATQTLPHSGSGFLDSAYFRLQESFFY
LPQLLFPENVMQSKDDSLVELEHRIDFELREGLVESRYWSAVTSHTAYWSSLDVALFLLTFMYKHEHDTE
AKPSLGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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