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Report for CCDS36874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36874.1 Public Mus musculus 14 Shld2 23 108 98 CCDS HistoryNCBI Gene:75698Re-query CCDS DB by CCDS ID:36874.1Re-query CCDS DB by GeneID:75698See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111917.2 ENSMUSP00000107548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111917.2Link to Ensembl Protein Viewer:ENSMUSP00000107548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111917Re-query CCDS DB by Protein ID:ENSMUSP00000107548
Original member Current member NCBI NM_001360074.1 NP_001347003.1 Accepted alive Link to Nucleotide Sequence:NM_001360074.1Link to Protein Sequence:NP_001347003.1Re-query CCDS DB by Nucleotide ID:NM_001360074Re-query CCDS DB by Protein ID:NP_001347003Link to BLAST:NP_001347003.1
Original member Current member NCBI NM_029389.3 NP_083665.2 Accepted alive Link to Nucleotide Sequence:NM_029389.3Link to Protein Sequence:NP_083665.2Re-query CCDS DB by Nucleotide ID:NM_029389Re-query CCDS DB by Protein ID:NP_083665Link to BLAST:NP_083665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347003.1 891 Q3UEN2 891 100% 0 0
NP_083665.2 891 Q3UEN2 891 100% 0 0

Chromosomal Locations for CCDS 36874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34237348 34237586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34238838 34238953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34241287 34241515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34245162 34245368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34248884 34249018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34249177 34249371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34259625 34259732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34267501 34268947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGAGTCAAGGATCACAAGTTCACATTTTTTTGGGTGCTCCAGTTGCTCCACTGAAAACGACAGTATCAC
AGGGAACAGCTTCCTTAATGTCCACTGCCAACGCCTGGGAAAAAGTCCGACTCTTCTATAAACAGCATTC
CTTGTATCTGAAGGCTGGAGATCAGGAGTTTAAAAATCTGGAAGACTGTCAAGTCCCCAAAGGTCTTGGC
CCTCCAGGCCTTCTTAGTGGTGACGTTTTGACGACTTCTGTGAGGAGGTCTGCTCAGGTGGATGAGGACT
TTAAACATTCTGCTTCCGAAGCACAGAGTGTGAAATCCCAGGTTAACCTGAGTGATATGACTAGTGGACA
AATGTGTGGGCTTGGGGACGGAGTTCAGCATTTACCCGAAGAAGAAAAAGATCAAAAGCTTCAATGTAAA
AATAAGAAAATTACAGATGAGCAGTCTAAAAATCAGTCAGATCCCTGCGTTCGGAACTTCCAAAGAGATT
TGTTTGCGTTAGACCTTAAGTGTGCAGCGAAACTGGATCTGGGCTGTTGTACTGAACAGATGAGTACAGG
GACAAAGCCAGAGCCGACAGGACATCGTGAAAGACAGAGTCAGGAGAGCTTCTCTGACACACGGTGTGAG
CCACAGTCCGAGGGAGCAGTCAGGAAGGCCTCAGACCAGAGACTGTCTGCTGAAGCTGAATTTCTCAGCG
TACTGACCTCCAGCCAACGGGCTTTTCTAGCTCAAGGGAATGATAAAGGTCAGGACTGTATAAATAAGAG
CACTGTAAATATGGAGGCAGAACCAACAGGAAGTCAGGGAGTCAGACGAACTGAAGGGGATTTTAGTAAG
CCTGGTGGAGATTTCGAAGAAGAATCTGAAAATGAGCAAAGCCAAGTGTATTCCCTGGAACTTTTTAGTC
CTGTTTGTCCTGAATCAGAAAGCAGTCACAGTCACATAAACCCTGGAAAAAATCTTGAAAACACAAGCTC
TCAAGAACTTTTCAGTAATGAAGAAAACCTGCCACCAAATGAGTTGTGTAGCTCCCATCCAAGTACCGCT
AACAGGAGCTGGAGCTGTAAAGATGATTCCCACCATTCTAAAGCTCTTTCTGAAGTCCATCAGGTGTCCA
AGAAGCCAAGGATGGATTCTAATATAAGAGAGGCAGCCAAAGCAGTGCCCCAGAGGGTCATGTCTGAATT
AAAGGACAGTAAAAAAATATCATTAATAAAAAATTGTGATTCTAAAAATCAGAAGTATAACTGCTTAGTC
ATGGTGCTAACCCCATGTCATGTAAAGGAAATAACTATAAAATCTGGACCAAATTCTGGTTCTAAAGTGC
CATTAGCAACGATTGTAGTTATTGATCAGTCAGAAATTAAGAAGAGGGTTGTTCTGTGGAGGACTGCAGC
ATTTGGGGCACTTACAGTGTTTCTTGGCGATATAATTTTACTTACAGACGTTGTTCTTTATGAGGATCAG
TGGATTGGTGAGACAGTACTCCAATCAACATTTACAAGTCAGTTACTAAATCTTGGAAGTTATTCATATG
TCCAGCCTGAAAAATATTCCAATGTAATTGCCAATGTTATACTTCAGGACTTATTGACATATGTGTCTAC
AAAACATTCCTATCTCAAAGATCTGCCTCAGAGGCAGCCTCAGAAAATGAACACTGTAGAGTTTGTGGAG
TTGGAGCAGTTGCAGCCTGATATATTAGTCCATGCAGTACTCAGAGTAGTGGATGTCACTGTATTGACAG
AGGCATTATATAGTTATAGAGGACAGAAGCAAAGAAAAGTTGTGTTAACCGTGGAACAGGCTCAAGGTCA
ACACTATGTGCTTGTATTATGGGGTCCTGGAGCAGCCTGGTATACTCAGCTTCAAAGGAAAAAAGATTCT
ATTTGGGAATTTAAGTACCTTTTTGTTCAGCGGAACAGCATACTAGAAAACTTAGAATTACATACAACAC
TGTGGTCTTCCTGTGAATGCCTATTTGATGATGACACAAGAGCAATTTCATTTAAAACAAAATTTCAAAA
AAATACATCCTCCTTTGTCAAGATATCAGACTTAGCGACTCACCTAGAGGATAAATATTCAGGAGTGGTT
CTGATTAAAGCCAAGGTTTCAGAGCTGGTGTTTTCTGCTGCAGCAGCTCAGAAGATAGCTTTGAATGCTC
GCAGCACTCTGCAGAGCATCTTCTCCTCTCTTCCCAGTATTGTGTATGCTGGCTGTGCACACTGTGGGTC
AGAACTAGAGACAGATGAGAACAGGATCTACAGACAGTGTCTGAGCTGCCTGCCATTTGTTGGGAAAAAA
ATATTCTATAGGCCGGCTTTAATGACCATAGTTGATGGAAGATATAATACTTGTGTCCATGTTGGGTCAA
AGATGATGGAGCAGATTCTTCTCAACATTTCTCCAGATTGCCTCAACAGAGTAATAGTGCCTTCCTCAGA
GGTCACCTACGGCATGGTCGCCTCAGACCTGCTCCATTCCTTGTTGGCTGTCAGTGCTGAGCCTTGTGTG
CTGAAGATCCAGAGCCTTTTCGAGTTGGATGAGAACAGCTACCCACTGCAACAGGATTTCTCCCTACTCG
ATTTCTGCCCTGACTCACGTAAGCTGTGGAGCCCAGGACTTTCTCTAAGGGCAGAGGGCACAGGAGGCAT
TCCTGGGAAGGAGTGA

Translation (891 aa):
MSQGSQVHIFLGAPVAPLKTTVSQGTASLMSTANAWEKVRLFYKQHSLYLKAGDQEFKNLEDCQVPKGLG
PPGLLSGDVLTTSVRRSAQVDEDFKHSASEAQSVKSQVNLSDMTSGQMCGLGDGVQHLPEEEKDQKLQCK
NKKITDEQSKNQSDPCVRNFQRDLFALDLKCAAKLDLGCCTEQMSTGTKPEPTGHRERQSQESFSDTRCE
PQSEGAVRKASDQRLSAEAEFLSVLTSSQRAFLAQGNDKGQDCINKSTVNMEAEPTGSQGVRRTEGDFSK
PGGDFEEESENEQSQVYSLELFSPVCPESESSHSHINPGKNLENTSSQELFSNEENLPPNELCSSHPSTA
NRSWSCKDDSHHSKALSEVHQVSKKPRMDSNIREAAKAVPQRVMSELKDSKKISLIKNCDSKNQKYNCLV
MVLTPCHVKEITIKSGPNSGSKVPLATIVVIDQSEIKKRVVLWRTAAFGALTVFLGDIILLTDVVLYEDQ
WIGETVLQSTFTSQLLNLGSYSYVQPEKYSNVIANVILQDLLTYVSTKHSYLKDLPQRQPQKMNTVEFVE
LEQLQPDILVHAVLRVVDVTVLTEALYSYRGQKQRKVVLTVEQAQGQHYVLVLWGPGAAWYTQLQRKKDS
IWEFKYLFVQRNSILENLELHTTLWSSCECLFDDDTRAISFKTKFQKNTSSFVKISDLATHLEDKYSGVV
LIKAKVSELVFSAAAAQKIALNARSTLQSIFSSLPSIVYAGCAHCGSELETDENRIYRQCLSCLPFVGKK
IFYRPALMTIVDGRYNTCVHVGSKMMEQILLNISPDCLNRVIVPSSEVTYGMVASDLLHSLLAVSAEPCV
LKIQSLFELDENSYPLQQDFSLLDFCPDSRKLWSPGLSLRAEGTGGIPGKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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