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Report for CCDS36590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36590.1 Public Mus musculus 13 Zmynd11 23 108 98 CCDS HistoryNCBI Gene:66505Re-query CCDS DB by CCDS ID:36590.1Re-query CCDS DB by GeneID:66505See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062658.14 ENSMUSP00000059767.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062658.14Link to Ensembl Protein Viewer:ENSMUSP00000059767.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000062658Re-query CCDS DB by Protein ID:ENSMUSP00000059767
Original member Current member EBI ENSMUST00000110637.7 ENSMUSP00000106267.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110637.7Link to Ensembl Protein Viewer:ENSMUSP00000106267.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110637Re-query CCDS DB by Protein ID:ENSMUSP00000106267
Original member Current member NCBI NM_001347472.1 NP_001334401.1 Accepted alive Link to Nucleotide Sequence:NM_001347472.1Link to Protein Sequence:NP_001334401.1Re-query CCDS DB by Nucleotide ID:NM_001347472Re-query CCDS DB by Protein ID:NP_001334401Link to BLAST:NP_001334401.1
Original member Current member NCBI NM_001347473.1 NP_001334402.1 Accepted alive Link to Nucleotide Sequence:NM_001347473.1Link to Protein Sequence:NP_001334402.1Re-query CCDS DB by Nucleotide ID:NM_001347473Re-query CCDS DB by Protein ID:NP_001334402Link to BLAST:NP_001334402.1
Original member Current member NCBI NM_144516.4 NP_653099.2 Accepted alive Link to Nucleotide Sequence:NM_144516.4Link to Protein Sequence:NP_653099.2Re-query CCDS DB by Nucleotide ID:NM_144516Re-query CCDS DB by Protein ID:NP_653099Link to BLAST:NP_653099.2

Chromosomal Locations for CCDS 36590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 9686862 9686984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9689063 9689248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9689452 9689724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9690446 9690514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9690903 9691110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9693430 9693548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9694269 9694346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9695129 9695184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9695739 9695826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9697644 9697736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9698628 9698705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9720773 9720932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 9735332 9735447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAGCCATTGAAA
TTATCAGAAATCAGAAGCAGATTGCCAACATTGATCGTATTACAAAGTATATGTCCCGAGTCCACGGTAT
GCATCCCAAAGAGACCACCCGCCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACA
GTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAGGAAGGATATTGGTTACCAGGAGATGAGATTAGCA
TTAAGAAGAAGCACTCTAACAAGCAGGAAATGGGCACCTACTTGAGGTTCATCGTCTCCCGAATGAAGGA
GCGGGCTATAGACCTTAATAAGAAAGGAAAGGACAGTAAGCATCCTATGTACCGGAGGCTGGTCCACTCA
GCTGTTGACGTCCCTACCATACAAGAGAAGGTGAATGAGGGGAAGTACCGGAGTTACGAGGAGTTCAAGG
CTGACGCACAGCTGCTTCTCCACAACACAGTGATCTTCTATGGAGCAGACAGTGAGCAGGCGGACATTGC
ACGGATGTTATATAAAGACACGTGTCACGAGCTGGACGAGCTGCAGCTTTGCAAGAACTGCTTCTATCTG
TCAAACGCACGGCCCGACAACTGGTTCTGCTACCCTTGCATACCTAATCATGAGCTGGTTTGGGCTAAAA
TGAAAGGTTTTGGGTTTTGGCCAGCCAAAGTCATGCAGAAAGAAGACAATCAAGTGGATGTTCGCTTCTT
TGGCCATCACCACCAGAGAGCCTGGATTCCTTCTGAAAACATCCAGGATATCACGGTCAATGTTCACCGA
CTGCACGTGAAGCGCAGCATGGGCTGGAAGAAGGCCTGTGACGAGCTGGAACTGCATCAGCGCTTCCTCC
GTGAAGGAAGGTTCTGGAAGTCTAAGAATGAGGACCGAGGTGAGGAAGAGGCAGAATCCAGTATCTCCTC
CACCAGTAACGAGCAGCTGAAGGTCACTCAAGAGCCAAGAGCAAAGAAAGGACGACGTAATCAGAGTGTG
GAGCCCAAAAAGGAAGAACCCGAGCCAGAAACGGAAGCAGTGAGTTCCAGCCAGGAAATCCCCACAATGC
CTCAGCCAATTGAGAGGGTGTCAGTGTCAACCCAGACCAAGAAGTTAAGTGCCTCTTCCCCACGAATGCT
GCATCGAAGCACTCAGACGACGAGCGACGGCGTCTGTCAGAGCATGTGCCACGACAAGTACACCAAAATT
TTTAATGACTTTAAAGACAGGATGAAGTCGGACCACAAGCGGGAAACAGAGAGAGTGGTCCGTGAAGCGC
TGGAAAAGTTGCGTTCTGAAATGGAAGAAGAAAAAAGACAGGCCGTGAACAAAGCTGTGGCCAGCCTGCA
GGGCGACATGGACAGAAAGGGTAAGCAGCTGAAGGAGAAGTGCAAGGAAGAGTTTGTAGAGGAGATCAAG
AAGCTAGCGGCGCAGCACAAGCAGCTCATTTCCCAGACCAAGAAGAAGCAGTGGTGCTACAACTGTGAGG
AGGAGGCCATGTACCACTGCTGCTGGAACACGTCCTACTGCTCCATCAAGTGCCAGCAGGAGCACTGGCA
CGCAGAGCACAAGCGCACCTGCCGCCGGAAGAGATGA

Translation (548 aa):
MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTRQLSLAVKDGLIVETLT
VGCKGSKAGIEQEGYWLPGDEISIKKKHSNKQEMGTYLRFIVSRMKERAIDLNKKGKDSKHPMYRRLVHS
AVDVPTIQEKVNEGKYRSYEEFKADAQLLLHNTVIFYGADSEQADIARMLYKDTCHELDELQLCKNCFYL
SNARPDNWFCYPCIPNHELVWAKMKGFGFWPAKVMQKEDNQVDVRFFGHHHQRAWIPSENIQDITVNVHR
LHVKRSMGWKKACDELELHQRFLREGRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSV
EPKKEEPEPETEAVSSSQEIPTMPQPIERVSVSTQTKKLSASSPRMLHRSTQTTSDGVCQSMCHDKYTKI
FNDFKDRMKSDHKRETERVVREALEKLRSEMEEEKRQAVNKAVASLQGDMDRKGKQLKEKCKEEFVEEIK
KLAAQHKQLISQTKKKQWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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