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Report for CCDS36497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36497.1 Public Mus musculus 12 Mlh3 23 108 98 CCDS HistoryNCBI Gene:217716Re-query CCDS DB by CCDS ID:36497.1Re-query CCDS DB by GeneID:217716See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019378.7 ENSMUSP00000019378.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019378.7Link to Ensembl Protein Viewer:ENSMUSP00000019378.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019378Re-query CCDS DB by Protein ID:ENSMUSP00000019378
Original member Current member EBI ENSMUST00000166821.7 ENSMUSP00000129900.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166821.7Link to Ensembl Protein Viewer:ENSMUSP00000129900.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166821Re-query CCDS DB by Protein ID:ENSMUSP00000129900
Original member Current member NCBI NM_001304475.1 NP_001291404.1 Accepted alive Link to Nucleotide Sequence:NM_001304475.1Link to Protein Sequence:NP_001291404.1Re-query CCDS DB by Nucleotide ID:NM_001304475Re-query CCDS DB by Protein ID:NP_001291404Link to BLAST:NP_001291404.1
Original member Current member NCBI NM_175337.2 NP_780546.1 Accepted alive Link to Nucleotide Sequence:NM_175337.2Link to Protein Sequence:NP_780546.1Re-query CCDS DB by Nucleotide ID:NM_175337Re-query CCDS DB by Protein ID:NP_780546Link to BLAST:NP_780546.1

Chromosomal Locations for CCDS 36497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85235622 85235729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85237515 85237666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85240798 85240876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85240960 85240983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85245763 85245922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85247612 85247723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85250302 85250373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85259193 85259265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85260800 85260904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85261661 85261752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85266152 85269410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4236 nt):
ATGATCAGGTGTCTATCAGATGACGTAAAAACCAAGTTGCGTTCCGGTTTAGCCATAAGCTCCTTGGGCC
AGTGTGTTGAAGAACTTACCCTTAACAGTATTGATGCTGAAGCAACATGTGTGGCCATCAGAGTGAATAT
GGAAACCTTCCAAGTTCAAGTGATAGACAATGGACTTGGGATGGCGGGGGACGATGTAGAGAAGGTGGGA
AACCGGTATTTTACTAGTAAATGCCACTCAGTGCGGGACTTGGAGAACCCAGCATTTTATGGCTTCCGAG
GAGAGGCCTTGGCAAGTATAGCCGACATGGCTGGTGCTGTGGAGATTTCATCCAAGAAAAACACAACACT
GAAAACCTTTGTGAAAATGTTTCAGAATGGAAAAGCCCTTGCCACCCATGAGGCTGATTTGACCAGACCA
AGTGTGGGGACTACAGTAACGGTCTATAACCTGTTTTACCAGTTTCCTGTGCGGAGGAAAAGCATGGATC
CTAGACTAGAGTTTGAGAAAGTTCGGCAGAGGGTAGAAGCTCTCTCACTTATGCACCCCTCCATTTCTTT
CTCTTTGAGGAACGATGTATCTGGATCCATGGTTCTTCAGCTCCCTAAAACCAAAGACATATGCTCTCGA
TTCTGTCAAATTTACGGATTGGGCAAGTCCCAAAAGTTAAGAGAAATACGTTTTAAATACAAGGAATTTG
AGTTCAGTGGCTACATCAGCTCTGAAGCACACTACAATAAGAATATGCAGTTTTTGTTTGTGAACAGAAG
ACTAGTTTTAAGAACAAAGTTGCATAAACTTATTGACTTTTTATTAAGAAAAGAAAGCATTATATGCAGG
CCAAAGAATGGCTCTGCCAGTAGGCAAATGAATTCAAGTCCTCGACACCGTTCTGCCTCAGAACTCCACG
GGATATATGTAATCAATGTGCAGTGCCCTTTCTGTGAGTATGATGTCTGCATAGAGCCAGCCAAAACTCT
GATTGAGTTTCAGAGCTGGGATACCGTGTTGATTTGTATTCAGGAAGGAGTAAAAAGGTTTTTAAAGCAA
GAAAAATTATTTGTAGAATTATCAGGTGAAGATATTAAGGAATTTAATGAAGATAATGGTTTTAGTTTGT
TTGGCACGACTCTTCAGACACATGTGTCTACTCATGAGAAGTGTGACCAGAGCAGTTTCCGGGAAGCGTG
TAATAAAATTCTGGATTCCTATGAAATGTTTAATTTGCAGTCAAAAGCTGTGAAAAGAATAGCTACTCTA
GAAAATAAAACCAGACAAAACCCTGGTGATTCAGAAACTATCAGAAAAAAGACAGTGGGCTCATTGTACA
CAGATGCATCGGATGGCCCGTGCTATAGTAAATCGGTAGAGTCTGTTTTACAGGACAGCAACAACAGTGC
TTACTTAGAACCGAGGGTGTCAGAAGAAGAGGTAGCCAAAACATCACACTCCGGAGAAAATGAGAAATGG
AAAAAATCTTTTTTGGAAAATAAGACTTCAGGAAGGATACATGAAACCAGTCCAAAAATGTTTTCAAGCC
CCATCCAAATGCATCACCTCCTTGAGGAGAGAGAGGCAGATCTGGAAATGCAGACAATAAGTAGTACTGT
TAATGTCATGGCTGCCAACATTCCCCAAAATAATGACATTCCGAGTCAACTGGAGAAATGGAAAGATGCT
CCTGAAGTGGGGTGCCAACCTCTGCCTTTTGAGACAACCTTATTAAGGGTACGGGGTACTCAGAGGAAGA
AGGAAAGAAGGAAAAAGGAGCCCAGTAGTCGTGGAAGAGTAAATGTTTTTAGTTATGGACAAGTTAAATT
ATGCTCCACTGGCTTTATAACTCATGTAGTACAAAGTGAGCACGCTAAATCAACTGAAACAGAACATTCA
TTTAAAAATTATGCTCGACCTGGTCCTGTAAGTGCCCAAGAAACATTTGGAAAAAGAACACACCATGCAA
TTGAGACTCCAGACAGCAGTGATTTAACAAGCACTTTAAGTAAAGAATCCAGTCAACCGCCCAACAAAAG
GTTTTGCAGAACAAATACAGGTTACGGGACAGAGAACAAACCTGTAGCAACAGATGACAACTTGGCTCTT
TTTCAGGAAAGCTGTAAAGAATCACACACAGATCGCCTTTTGCCTGATGCATCCTCCTTCCCATGGTGTA
GATATGTTTCCGATGGTTGTAGGAAAATAGATAAAAGGGGTTCCTTCAAACAGGTAGTCCGTAGGAAGCT
AAGCTTGCGTTCACAAGTAGGGTCTTTAGAGAAGTTTAAGAGGCAGTATGGGAAGGTCAGCAGTTCCCTA
GATACAGAAAAGGATAATAACACTGAAGTCAGGACTCATCTTGATCCTCAAAATGAACCCGATGTTCTTC
TGAAAGACAAGAGCCACTTAGATATGTCTGATGGTTGTGAGATCACTACTGTGGAGCACAGTGAGACTTG
TCAACCATTAAGTCCCATCCTGTACCCAGAAAAAATTTTATTTTCCAAAGAAGATCGCTTAGAACAGATG
CCTCATTTGAGAGAAAGTCCTATAACTCTGGAAGAATTATCTCACTGTAACAGAAAAGCTGATGTTGAGA
AGTCCGCTGCATCACTGGCTTCTAAATTATCCAAACTAAAGGATTCTGAAAAAGAGATGCAAACCGTGGG
GATGACAGGTCATACTAGTGAACTTCCAGATTCAAATCCCAGTTGGAAAGATAATAGCCAGTGCACTAGG
TTAGACTTGGATTTTTGTGAATTATTAAAAAACAAACTTGAAAAAATAGAGAGTGATATGCTTCCAATGG
CAGATTCTGCCACAGAGGATGGTCCCATCAATAAAAACAGTGAACTACATCCTAACAATACAACGGATGA
CACAGAGAAACCAGAAACTCCTTTGCTGTTCCCCTGTAATGATTCTAAAATCAGCAGAGATTCAGATGTT
CTTATCAGAACTTCAGAACAACCTACAGGAAACCCTGACTCTGTCGGTAAAGTGATAATGAGTCAGGTAG
AGGATGGCATTGGCAGCCAAGGTGGAGTCTGTCCCCAGGGTGATGAATCTAAGGCAAGATCTTGTTCCAA
AAATGAACCAAACGCACACTGTATGGATTGGCAGCAGCATTTTGATGTAACCCTGGGAAGAATGGTTTAC
ATCAACAGAATGACAGGACTTAGCACATTCGTTGCTCCAACTGACGACCTTCATACTGCTTGTACTAAAG
ATCTGACAACTGTGGCTGTGGATGTCCTGCTTGGGAATGATGCTGTGGATGCTGCTGCTGCTGCTGTCAG
TGAACCCCTTCAGTCTCTGTTTTCAGAATGGAGCAATCCAGTGTTTGCTCGATACCCAGAGGTTGCTGTT
GATGTCAGCAGTGGCCAGGCTGAGAGCTTAGCCGTTAAAATTCACAACGTCCTGTATCCCTATCGCTTCA
CCAAAGAGATGATTCACTCAGTGAAGGTTCTCCAGCAAGTGGATAACAAGTTTATTGCCTGCTTAATGAG
CACGAGGATGGATGAGGATGGCCGAACAGGTGGAAACCTGTTAGTCCTGGTGGACCAGCATGCTGCCCAT
GAACGCATTCGTTTGGAGCAGCTTATTACTGATTCCTATGAGAAACAAGATCCACAAAGCGCTGGCCGGA
AGAAATTATTGTCTTCCACAATAATCCCTCCACTGGCAATCACCGTGTCAGAGGAACAAAGGAGACTCTT
ACGGTCTTACCACAAACATTTAGAAGATCTGGGGCTTGAGTTGCTCTTTCCAGATGCTAGTGATTCTCTG
ATCCTGGTGGGAAAAGTGCCGCTCTGCTTTGTAGAGAGAGAAGCTAGTGAGCTTCGAAGAGGACGCTCTA
CTGTGACTAAGAGTATTGTGGAGGAATTAATTCGAGAACAAGTGGAGCTGCTCCAGACCACAGGAGGTAT
CCAAGGGACACTGCCACTGACTGTCCAGAAGGTGTTGGCCTCCCAGGCCTGCCATGGGGCTATTAAGTTT
AATGATCGTCTGAGCCTAGAAGAGAGCTGCCGCCTCATCGAAGCTCTGTCCTTGTCCCAGCTGCCATTTC
AGTGTGCTCATGGGAGACCCTCAATGCTGCCCTTAGCTGACCTGGACCACTTGGAGCAGGAAAAACAGGT
TAAACCCAACCTTGCTAAACTTCGCAAAATGGTTCGTGCCTGGCATCTCTTTGGAAAAACAGAGCAGAAC
CTGCAGCAGCCTATACGTCCTTGTGAGCCTCCATGA

Translation (1411 aa):
MIRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRVNMETFQVQVIDNGLGMAGDDVEKVG
NRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTFVKMFQNGKALATHEADLTRP
SVGTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSR
FCQIYGLGKSQKLREIRFKYKEFEFSGYISSEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICR
PKNGSASRQMNSSPRHRSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSWDTVLICIQEGVKRFLKQ
EKLFVELSGEDIKEFNEDNGFSLFGTTLQTHVSTHEKCDQSSFREACNKILDSYEMFNLQSKAVKRIATL
ENKTRQNPGDSETIRKKTVGSLYTDASDGPCYSKSVESVLQDSNNSAYLEPRVSEEEVAKTSHSGENEKW
KKSFLENKTSGRIHETSPKMFSSPIQMHHLLEEREADLEMQTISSTVNVMAANIPQNNDIPSQLEKWKDA
PEVGCQPLPFETTLLRVRGTQRKKERRKKEPSSRGRVNVFSYGQVKLCSTGFITHVVQSEHAKSTETEHS
FKNYARPGPVSAQETFGKRTHHAIETPDSSDLTSTLSKESSQPPNKRFCRTNTGYGTENKPVATDDNLAL
FQESCKESHTDRLLPDASSFPWCRYVSDGCRKIDKRGSFKQVVRRKLSLRSQVGSLEKFKRQYGKVSSSL
DTEKDNNTEVRTHLDPQNEPDVLLKDKSHLDMSDGCEITTVEHSETCQPLSPILYPEKILFSKEDRLEQM
PHLRESPITLEELSHCNRKADVEKSAASLASKLSKLKDSEKEMQTVGMTGHTSELPDSNPSWKDNSQCTR
LDLDFCELLKNKLEKIESDMLPMADSATEDGPINKNSELHPNNTTDDTEKPETPLLFPCNDSKISRDSDV
LIRTSEQPTGNPDSVGKVIMSQVEDGIGSQGGVCPQGDESKARSCSKNEPNAHCMDWQQHFDVTLGRMVY
INRMTGLSTFVAPTDDLHTACTKDLTTVAVDVLLGNDAVDAAAAAVSEPLQSLFSEWSNPVFARYPEVAV
DVSSGQAESLAVKIHNVLYPYRFTKEMIHSVKVLQQVDNKFIACLMSTRMDEDGRTGGNLLVLVDQHAAH
ERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSYHKHLEDLGLELLFPDASDSL
ILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVELLQTTGGIQGTLPLTVQKVLASQACHGAIKF
NDRLSLEESCRLIEALSLSQLPFQCAHGRPSMLPLADLDHLEQEKQVKPNLAKLRKMVRAWHLFGKTEQN
LQQPIRPCEPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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