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Report for CCDS36268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36268.1 Public Mus musculus 11 Dhx40 23 108 98 CCDS HistoryNCBI Gene:67487Re-query CCDS DB by CCDS ID:36268.1Re-query CCDS DB by GeneID:67487See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018569.13 ENSMUSP00000018569.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018569.13Link to Ensembl Protein Viewer:ENSMUSP00000018569.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018569Re-query CCDS DB by Protein ID:ENSMUSP00000018569
Original member Current member NCBI NM_026191.2 NP_080467.3 Accepted alive Link to Nucleotide Sequence:NM_026191.2Link to Protein Sequence:NP_080467.3Re-query CCDS DB by Nucleotide ID:NM_026191Re-query CCDS DB by Protein ID:NP_080467Link to BLAST:NP_080467.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080467.3 779 Q6PE54 779 100% 0 0

Chromosomal Locations for CCDS 36268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86770122 86770261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86771030 86771258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86771894 86771963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86773804 86773898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86775660 86775768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86776615 86776729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86784879 86785036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86785757 86785837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86789167 86789349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86789486 86789572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86793162 86793261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86797623 86797754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86798922 86798988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86799420 86799647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86800969 86801088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86804257 86804402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86806460 86806627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86807438 86807549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGTCCCGGTTTCCCGCCGTCGCGGGCAGGGCGCCAAGGCGGCAGGAGGAAGGCGAGCGGCCAATAGAGC
TCCAGGAAGAGCGGCCGTCAGCTGTTCGCATCGCTGACAGAGAAGAGAAAGGATGCACATCACAGGAGGG
AGGAACAACTCCAACGTTTCCTATTCAGAAACAAAGAAAAAAGCTCATTCAAGCTGTGAGGGACAACTCG
TTCCTCATCGTTACTGGAAATACAGGAAGTGGTAAAACAACTCAACTCCCTAAATACCTTTATGAAGCAG
GGTTTTCACAACATGGTATGATTGGTGTGACTCAGCCACGAAAAGTAGCCGCCATATCAGTTGCTCAGAG
GGTTGCTGAGGAAATGAAATGCACTTTGGGATCTAAAGTAGGATACCAAGTTCGTTTTGATGATTGCAGC
TCCAAGGAAACAGCAATCAAATACATGACTGATGGATGTTTACTCAAACATATTTTGGGAGATCCAAATC
TTAGCAAATTCAGTGTCATTATTTTGGATGAAGCCCATGAAAGAACTTTAACTACAGATATCTTATTTGG
TTTACTGAAGAAGCTGTTTCAGGATAAGTCTCCTAACAGGAAAGAGCATTTAAAGGTGGTAGTGATGTCA
GCAACTATGGAACTAGCCAAGCTCTCTGCATTCTTTGGAAATTGCCCCATATTTGATATACCTGGAAGAC
TCTATCCAGTCAGAGAGAAATTCTGCAATTTGATCGGACCACGAGACAGAGAAAATACTGCATATATTCA
AGCGATTGTGAAAGTGACCATGGATATTCATTTGAATGAAATGGCTGGAGACATCTTAGTTTTTCTGACT
GGCCAGTTTGAGATAGAGAAGAGTTGCGAGCTGCTCTTTCAGATGGCGGAGTCTGTTGACTATGATTATG
ATGTACAAGATACCACGCTAGATGGCTTGTTGATTCTGCCATGTTACGGCTCTATGACAACAGATCAACA
GAGGAGAATATTTTTGCCACCTCCTCCTGGAATTAGAAAATGTGTTATATCCACCAATATTTCTGCAACA
TCTTTGACAATAGATGGGATCAGATATGTGGTGGATGGAGGCTTTGTGAAGCAATTAAATCACAACCCAA
GATTAGGGCTGGACATCCTGGAGGTGGTTCCTATTTCAAAAAGTGAAGCATTACAACGCAGTGGCCGTGC
GGGCAGGACCGCCTCAGGAAAGTGCTTTAGGATTTACAGTAAAGAGTTTTGGAGCCAGTGTATGCCTGAC
CATGTGATCCCAGAGATTAAGAGAACTAGTTTGACATCTGTAGTTCTGACATTAAAGTGCCTTGCCATAC
ATGATGTCATAAGGTTTCCATATTTGGATCCACCTAATGAGAGACTTATTTTGGAAGCACTTAAACAACT
TTATCAGTGTGATGCTATTGACAGGAGTGGCCATGTGACAAGATTGGGATTATCCATGGTGGAGTTCCCT
CTCCCCCCACATCTGACGTGTGCAGTGATCAGGGCTGCTTCTCTTGACTGTGAAGATTTGCTGCTTCCAA
TAGCAGCAATGCTATCTGTGGAAAATGTCTTCATCAGACCTGTTGATCCAGAGTACCAGAAGGAAGCAGA
ACAGAGACATCGGGAATTGGCAGCGAAAGCTGGAGGATTTAATGACTTTGCAACTTTAGCTGTCATTTTT
GAACAGTGCAAATCAAGTGGAGCTCCGGCTTCGTGGTGCCAGAAGCACTGGATTCACTGGCGGTGCTTAT
TCTCTGCATTTCGTGTGGAAGCTCAACTTCGGGAACTGATCAGGAAACTAAAGCAGCAAAGTGATTTCCC
AAGAGAGACTTTTGAAGGCCCTAAACATGAAGTACTACGAAGATGTCTTTGTGCAGGCTACTTCAAAAAT
GTTGCTCGAAGATCTGTTGGCAGAACATTTTGCACAATGGATGGGCGTGGAAGTCCAGTTCATATCCATC
CTTCCTCAGCACTTCATGAACAGGAAACCAAACTTGAATGGATAATTTTTCATGAAGTATTAGTTACCAC
CAAAGTCTATGCAAGAATTGTGTGCCCAATCCGTTATGAATGGGTGAGAGACTTACTACCCAAGTTGCAT
GAACTTAATGCGCATGATTTGAGCAGTGTGGCTAGACGTGAAATGAGAGAAGATGCAAGAAGAAAATGGA
CAAATAAGGAAAATGTGAAACAGCTAAAGGATGGAATATCAAAAGAAGTTCTAAAGAAAATGCAAAGAAG
AAATGATGACAAATCCATATCAGATGCACGGGCTCGCTTCCTTGAGAGAAAGCAACAGAGAATCCAGGAC
CACAGTGACACATTAAAGGAAACTGGCTAA

Translation (779 aa):
MSRFPAVAGRAPRRQEEGERPIELQEERPSAVRIADREEKGCTSQEGGTTPTFPIQKQRKKLIQAVRDNS
FLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCS
SKETAIKYMTDGCLLKHILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMS
ATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLT
GQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISAT
SLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKEFWSQCMPD
HVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFP
LPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQRHRELAAKAGGFNDFATLAVIF
EQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFPRETFEGPKHEVLRRCLCAGYFKN
VARRSVGRTFCTMDGRGSPVHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLPKLH
ELNAHDLSSVARREMREDARRKWTNKENVKQLKDGISKEVLKKMQRRNDDKSISDARARFLERKQQRIQD
HSDTLKETG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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