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Report for CCDS36186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36186.1 Public Mus musculus 11 Pik3r6 23 108 98 CCDS HistoryNCBI Gene:104709Re-query CCDS DB by CCDS ID:36186.1Re-query CCDS DB by GeneID:104709See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36186.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060441.6 ENSMUSP00000052522.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060441.6Link to Ensembl Protein Viewer:ENSMUSP00000052522.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060441Re-query CCDS DB by Protein ID:ENSMUSP00000052522
Original member Current member NCBI NM_001081566.2 NP_001075035.1 Accepted alive Link to Nucleotide Sequence:NM_001081566.2Link to Protein Sequence:NP_001075035.1Re-query CCDS DB by Nucleotide ID:NM_001081566Re-query CCDS DB by Protein ID:NP_001075035Link to BLAST:NP_001075035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001075035.1 756 Q3U6Q4-1 756 100% 0 0

Chromosomal Locations for CCDS 36186.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 68520275 68520287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68525600 68525683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68526331 68526422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68527077 68527145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68528451 68528583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68528756 68528825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68529892 68530075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68531422 68531584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68532494 68532580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68533466 68533880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68534193 68534283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68536104 68536226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68539899 68540009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68543598 68543685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68543977 68544047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68544720 68544810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68545797 68545915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68551224 68551336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68551891 68552044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGGAGAGCTCAGATGTGGAGCTGGACTTCCAGAGGAGTGTACAGGCTGTGCTGCGAGAGCTCAACACCC
CAAACCCAGCCCTCCAGAGCAATCAGGGCATGTGGAGATGGTCTCTGCACAAGAAGGTGGAGAGAAACCC
AGGAAAGAGCTCCATTCTGGTCCGAATTCTGCTCAGAGAGCTGGAGAAGGCAGAAAGCGAGGACGGACGC
CGTGTCATCATTCCCTTGCTGCTCACTCTAATGTCCGTGCTCACTAAGGCCACAGGCATCCCAGAAGATC
TGTACCATAGAGCTTATACCTTCTGCACCAGGCTACTGACCCTGCCGGCCCCCTACTCTACAGTCGCCTT
GGACTGCGCCATAAGACTGAAAACAGAGACGGCTGTCCCAGGTACGCTGTACCAGAGGACTGTCATCGCT
GAGCAGAATCTGATAAGTGAACTATACCCTTACCAGGAGAGGGTGTTTCTGTTCGTGGACCCTGAGCTGG
TTTCTGCCTCCGTGTGCAGTGCCCTGCTGCTGGAGATCCAGGCGGCCCAAGAGCAGCAGACACCGGAGGC
CTGCATGCGCCACGTGGTCTCCCACGCCTTGCAGGCAGCTCTGGGAGAAGCCTGCCACACAGGTGCTCTG
AACAGGAAGCTGCAGGCCAGCTCCCGACGCGTCCTGGAATACTATTTCCACGCCGTTGTGGCTGCCATAG
AGCAGGTGGCTAGCGAGGACAGCCCCAGCCGGCTGGGACACCTGGAGAAGATGGAGGAGATTTACTGCTC
GCTGCTAGGGCCTGCGACCACAAGAAGGCACTGTGTCGGTGACCTTCTGCAAGACCGCCTGCCAAGCATC
CCCCTGCCCAGCCCCTACATCACCTTCCACCTCTGGACCGACCAGGAGCAGCTCTGGAAGGAACTGGTAC
TCTTCCTCCGCCCACGCTCGCAGCTGCGCCTCAGTGCTGATCTGGATGCCTTGGATCTACAAGGATTTAG
GCTAGACCGGGACTTGGCCCGGGTGTCCACCGACAGTGGAATTGAGCGGGACCTCCCTTTGGGGAGCGAT
GAGCTTCCGGACCCCAGCAGCTCTGAGATGGAGCGGGCCGCCCTTCAACGCAAGGGGGGCATCAAGAAGC
GTGTGTGGCCCCCTGACTTCTTCATGCCTGGCAGCTGGGATGGGCCCCCGGGGTTGCATCGGAGGACTGG
CAGGCCTAGTGGGGACGGGGAGCTGCTACCTGGAGTCTCTCGGGTGCATACCGCCCGCGTGCTCGTTCTG
GGGGATGACAGGATGCTAGGGCGCTTGGCCCAGGCTTACTACAGACTCAGGAAACGGGAGACCAAGAAGT
TCTGCCTCACTCCTAGACTCAGCCTACAGCTCTACTATATCCCTGTGCTGGCGCCTCAGGTGACTGGACA
GGATCCAGAAGCATCCAGGAAGCCTGAGCTGGGAGAGCTGGCTTCCTTCCTGGGTCGAGTCGACCCATGG
TATGAAAGCACTGTCAACACCCTGTGTCCTGCCATCCTCAAGCTGGCCGAGATGCCTCCCTACTTGGACA
CATCTAGGACCGTGGACCCCTTCATCCTGGATGTCATCACTTACTATGTCCGCATGGGCACTCAGCCCAT
CTATTTCCAGCTCTACAAGGTTAAGATCTTCACCAGCTTGAGTCACGACCCTACAGAGGACATTTTCCTC
ACAGAGCTGAAGGTGAAGATCCAAGACTCCAAGTCCCCCAAAGAGGGCTCTTCACCTCGAAGGAGAGGGG
CAGCTGAGGGCACAGGAGCTGAGCTGTCCATGTGCTACCAGAAGGCCCTGCTCAGCCACAGACCACGAGA
GGTCACTGTTTCTCTGCGGGCCACCGGGCTGGTCCTGAAGGCCATTCCAGCTGGTGACACTGAAGTTTCA
GGGTTCTTCCACTGTACCTCACCAAATGCTGCTTCTGCCACAGACTGTTCCTGTCTGCACGTCAGTGTGA
CAGAGGTGGTCAAGTCCTCCAATCTGGCAGGAAGGTCATTTACGACATCAACCAACACCTTCCGGACATC
CAGTATCCAAGTCCAGAGCCAAGACCAGAGGCTGCTCACACTATGGCTGGACAAGGACGGACGGCGGACT
TTCAGGGATGTGGTCAGATTTGAGGTCAGTCCCTGCCCAGAGCCATGTTCACGGACCCAGAAATCCAAGA
CGTCAGCGCTCAATTCGCACGGGCAGGAGACAGAGAAGAACATGGCCAAGCCCAATTCTCTTCTGATGCC
CATCAACACATTCTCTGGCATCATCCAATAA

Translation (756 aa):
MESSDVELDFQRSVQAVLRELNTPNPALQSNQGMWRWSLHKKVERNPGKSSILVRILLRELEKAESEDGR
RVIIPLLLTLMSVLTKATGIPEDLYHRAYTFCTRLLTLPAPYSTVALDCAIRLKTETAVPGTLYQRTVIA
EQNLISELYPYQERVFLFVDPELVSASVCSALLLEIQAAQEQQTPEACMRHVVSHALQAALGEACHTGAL
NRKLQASSRRVLEYYFHAVVAAIEQVASEDSPSRLGHLEKMEEIYCSLLGPATTRRHCVGDLLQDRLPSI
PLPSPYITFHLWTDQEQLWKELVLFLRPRSQLRLSADLDALDLQGFRLDRDLARVSTDSGIERDLPLGSD
ELPDPSSSEMERAALQRKGGIKKRVWPPDFFMPGSWDGPPGLHRRTGRPSGDGELLPGVSRVHTARVLVL
GDDRMLGRLAQAYYRLRKRETKKFCLTPRLSLQLYYIPVLAPQVTGQDPEASRKPELGELASFLGRVDPW
YESTVNTLCPAILKLAEMPPYLDTSRTVDPFILDVITYYVRMGTQPIYFQLYKVKIFTSLSHDPTEDIFL
TELKVKIQDSKSPKEGSSPRRRGAAEGTGAELSMCYQKALLSHRPREVTVSLRATGLVLKAIPAGDTEVS
GFFHCTSPNAASATDCSCLHVSVTEVVKSSNLAGRSFTTSTNTFRTSSIQVQSQDQRLLTLWLDKDGRRT
FRDVVRFEVSPCPEPCSRTQKSKTSALNSHGQETEKNMAKPNSLLMPINTFSGIIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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