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Report for CCDS35932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35932.1 Public Mus musculus 10 Fam13c 23 108 98 CCDS HistoryNCBI Gene:71721Re-query CCDS DB by CCDS ID:35932.1Re-query CCDS DB by GeneID:71721See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062883.6 ENSMUSP00000051375.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062883.6Link to Ensembl Protein Viewer:ENSMUSP00000051375.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062883Re-query CCDS DB by Protein ID:ENSMUSP00000051375
Original member NCBI NM_024244.4 NP_077206.3 Updated not alive Link to Nucleotide Sequence:NM_024244.4Link to Protein Sequence:NP_077206.3Re-query CCDS DB by Nucleotide ID:NM_024244Re-query CCDS DB by Protein ID:NP_077206
Current member NCBI NM_024244.5 NP_077206.3 Accepted alive Link to Nucleotide Sequence:NM_024244.5Link to Protein Sequence:NP_077206.3Re-query CCDS DB by Nucleotide ID:NM_024244Re-query CCDS DB by Protein ID:NP_077206Link to BLAST:NP_077206.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077206.3 601 Q9DBR2 601 100% 0 0

Chromosomal Locations for CCDS 35932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70441014 70441075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70448758 70448814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70451027 70451228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70477154 70477272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70498886 70498949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70520778 70520925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70534684 70534894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70536366 70536504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70542644 70542725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70544328 70544530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70551695 70551790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70553029 70553225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70554488 70554589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70557240 70557363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGTTTTCTTGTTTCTGTTTCAGCCTTCAGGATAATTCCTTCGGCAGCGCCGCTGTAACTGAGTGTGACG
AAGATACAGTCTCTGTACATGAAGACGAAGACGACTGCTCTGGGCTCAGAGATGAAGACAATAAAGAGAA
TTACCCCCAGGTGGCAGCTCGCTTAGATGAGCTCGCCCTGCCCTCCCACGAGGCTCAGCAGCATGTAGAA
CAGACCCTGCCTGTGGATGGAGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCA
TCCTCAGAGCCGAGAGTGGTCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCAGTC
AGAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTCAGGTGCCAGGAA
ACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCTACCATTTGGCCAAAGGATGCTTTTGGAACTCAGC
AGGACTTACATGAGAATTCCTTGCTGAAGCTCCAAGCCCTCGAGTCTGGTCTGTGCTCCGCGTTTCTGAC
GACCCAGGAAGAAGATGGCCAGGTGCACGGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGTGCGCCT
GCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCTCATAAGGATGCACCGGGTGACGCCGACGGTACCT
CAGAAGACCTCCAGTCTGCAGGGACCAGCAGGCTACTCTATCACATCACCGATGGTGACAATCCGTTGCT
GTCACCACGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCCA
CCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGC
AGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAAATT
TGAACAAGAAAAGAAATACCGCCCGTCGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGAAATGGATG
AACGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAGTA
CGCCCAAGGGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCAGAGAAAATGGCAAGTCGGA
AGCCGTGGGCCCCGAACCAGGCTCCTCTGGCGAGGAGACTTCAGATGCTGTGGTGCCGGAGAAGAGAGAA
CAGACCCCTCCCCAGGACGATGGGAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCCTCTTTATGACC
GATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTCAGGAGGAAGAGGACTC
TGATGAAGACTGTCCACAGGGAAGTCAGCAACCCTCTTTACCAGATCCAGTGTCCCGCCTACCTGTCGGT
GATCACCTCATCTACTCGGAGACAGAGCCTGTGAGGACCCTGCTACCAGATGAAAAGAAAGAAGGGAAGC
AGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATCTCCGAGAAAC
TAGGGCTGACAAGAAGAGGCTACGGAAAGCCCTGCGAGAATTTGAAGAACAATTTTTTAAACAGACGGGA
AGAAGCCCCCAGAAGGAAGACAGGATGCCGATGGCAGATGAGTACTGTGAATACAAGCACATAAAAGCCA
AGCTGAGACTACTGGAGGTCCTCATCAGCAAGCAGGATGTGGCCAAAACTATTTGA

Translation (601 aa):
MFSCFCFSLQDNSFGSAAVTECDEDTVSVHEDEDDCSGLRDEDNKENYPQVAARLDELALPSHEAQQHVE
QTLPVDGVLRTSMGNFKSRKPKSILRAESGRNHGESQETEHVVPSQSECQGRAGTPAHESPQSSIFRCQE
TVRLQPRIDQRATIWPKDAFGTQQDLHENSLLKLQALESGLCSAFLTTQEEDGQVHGVKDPAPASTQSAP
ADSADPADPMPAHKDAPGDADGTSEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSP
PSSQQFMMPRSSSRCGSGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWM
NDLAKGRKQLKELKLKLSEEQGSTPKGPRRNLSCEQPPVPRENGKSEAVGPEPGSSGEETSDAVVPEKRE
QTPPQDDGKGTKQDKNLIKPLYDRCRGIKQILPTPSLIPTIQEEEDSDEDCPQGSQQPSLPDPVSRLPVG
DHLIYSETEPVRTLLPDEKKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTG
RSPQKEDRMPMADEYCEYKHIKAKLRLLEVLISKQDVAKTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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