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Report for CCDS35700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35700.1 Public Mus musculus 1 C4bp 23 108 98 CCDS HistoryNCBI Gene:12269Re-query CCDS DB by CCDS ID:35700.1Re-query CCDS DB by GeneID:12269See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027657.13 ENSMUSP00000027657.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027657.13Link to Ensembl Protein Viewer:ENSMUSP00000027657.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027657Re-query CCDS DB by Protein ID:ENSMUSP00000027657
Original member NCBI NM_007576.3 NP_031602.3 Updated not alive Link to Nucleotide Sequence:NM_007576.3Link to Protein Sequence:NP_031602.3Re-query CCDS DB by Nucleotide ID:NM_007576Re-query CCDS DB by Protein ID:NP_031602
Current member NCBI NM_007576.4 NP_031602.3 Accepted alive Link to Nucleotide Sequence:NM_007576.4Link to Protein Sequence:NP_031602.3Re-query CCDS DB by Nucleotide ID:NM_007576Re-query CCDS DB by Protein ID:NP_031602Link to BLAST:NP_031602.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031602.3 469 P08607 469 100% 0 0

Chromosomal Locations for CCDS 35700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130636206 130636370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130636701 130636876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130639069 130639233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130642934 130643113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130648029 130648220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130648384 130648469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130653325 130653421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130655881 130656063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130657132 130657297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGTGTGCAAAGCAGCAGCAGACCCTGCTCCCCACAAGAGCTGCACATGGGAGGCTTCATAGAAACAGAG
ATGCTGTGGCCTGGCCCTTTTCTACGCTCTGCAGAGTCTCTGGCCCAACTTTGTTCCAAATGACCTTTAC
TGCTGCTCTTTGGGTTGCTGTATTTGGCAAATGTGGTCCACCACCTGCTATACCCAATGCCCTGCCAGCA
AGTGACGTGAATCGGACAGACTTCGAAAGTCACACCACCCTGAAATACGAATGCCTCCCTGGCTATGGTA
GGGGAATATCAAGGATGATGGTTTACTGCAAACCTTCGGGAGAATGGGAGATTTCTGTCTCCTGTGCCAA
AAAACATTGCCGTAATCCAGGATATTTAGATAATGGATATGTAAATGGAGAGACTATCACTTTTGGATCA
CAGATAGAATTCAGCTGCCAGGAAGGATTTATCTTAGTTGGCTCATCCACTAGTTCTTGTGAGGTCCGAG
GCAAAGGAGTTGCCTGGAGTAATCCTTTCCCAGAATGTGTAATTGTAAAGTGTGGGCCCCCTCCAGACAT
CAGCAATGGGAAGCACAGTGGTACAGAAGACTTCTACCCATATAACCATGGAATCTCCTATACCTGTGAT
CCCGGCTTCAGGCTCGTTGGCAGCCCCTTCATAGGCTGCACTGTGGTGAACAAAACAGTACCTGTTTGGA
GCTCAAGCCCTCCTACCTGTGAAAAGATCATCTGTTCTCAGCCAAATATTTTACATGGTGTAATTGTTTC
TGGATATAAAGCTACCTATACACACAGAGACTCTGTTAGATTGGCCTGCCTGAATGGGACTGTCCTCAGA
GGCAGACATGTCATCGAGTGTCAAGGTAATGGCAATTGGAGTTCTCTCCCGACTTGTGAGTTCGACTGTG
ATTTACCGCCTGCCATTGTCAATGGATATTATACTAGTATGGTCTACTCTAAGATAACTCTGGTTACATA
TGAATGTGATAAAGGATACAGACTGGTTGGAAAGGCAATCATCTCCTGCAGCTTTTCAAAGTGGAAAGGG
ACAGCTCCACAGTGTAAAGCTCTATGTCAGAAACCAGAGGTAGGAAATGGAACGCTGTCTGATGAGAAAG
ATCAGTATGTTGAGTCTGAAAATGTCACCATCCAATGTGACTCTGGCTTTGCCATGCTGGGTTCCCAAAG
CATCAGTTGTTCAGAGAGTGGAACCTGGTATCCAGAGGTGCCCAGATGTGAGCAGGAGGCCTCTGAAGAC
CTTAAGCCTGCGCTTACAGGCAACAAGACCATGCAGTATGTGCCAAATTCACACGATGTGAAAATGGCTC
TGGAGATCTACAAGCTGACTCTGGAGGTTGAACTACTACAGCTCCAGATACAAAAGGAGAAACACACTGA
AGCACACTGA

Translation (469 aa):
MCAKQQQTLLPTRAAHGRLHRNRDAVAWPFSTLCRVSGPTLFQMTFTAALWVAVFGKCGPPPAIPNALPA
SDVNRTDFESHTTLKYECLPGYGRGISRMMVYCKPSGEWEISVSCAKKHCRNPGYLDNGYVNGETITFGS
QIEFSCQEGFILVGSSTSSCEVRGKGVAWSNPFPECVIVKCGPPPDISNGKHSGTEDFYPYNHGISYTCD
PGFRLVGSPFIGCTVVNKTVPVWSSSPPTCEKIICSQPNILHGVIVSGYKATYTHRDSVRLACLNGTVLR
GRHVIECQGNGNWSSLPTCEFDCDLPPAIVNGYYTSMVYSKITLVTYECDKGYRLVGKAIISCSFSKWKG
TAPQCKALCQKPEVGNGTLSDEKDQYVESENVTIQCDSGFAMLGSQSISCSESGTWYPEVPRCEQEASED
LKPALTGNKTMQYVPNSHDVKMALEIYKLTLEVELLQLQIQKEKHTEAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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