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Report for CCDS30792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30792.1 Public Homo sapiens 1 PSRC1 24 110 108 CCDS HistoryNCBI Gene:84722Re-query CCDS DB by CCDS ID:30792.1Re-query CCDS DB by GeneID:84722See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 30792.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409138.6 ENSP00000474667.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409138.6Link to Ensembl Protein Viewer:ENSP00000474667.1Re-query CCDS DB by Nucleotide ID:ENST00000409138Re-query CCDS DB by Protein ID:ENSP00000474667
Original member Current member NCBI NM_001363309.2 NP_001350238.1 Accepted alive Link to Nucleotide Sequence:NM_001363309.2Link to Protein Sequence:NP_001350238.1Re-query CCDS DB by Nucleotide ID:NM_001363309Re-query CCDS DB by Protein ID:NP_001350238Link to BLAST:NP_001350238.1
Original member Current member NCBI NM_001394005.1 NP_001380934.1 Accepted alive Link to Nucleotide Sequence:NM_001394005.1Link to Protein Sequence:NP_001380934.1Re-query CCDS DB by Nucleotide ID:NM_001394005Re-query CCDS DB by Protein ID:NP_001380934Link to BLAST:NP_001380934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350238.1 363 Q6PGN9-1 363 100% 0 0
NP_001380934.1 363 Q6PGN9-1 363 100% 0 0

Chromosomal Locations for CCDS 30792.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 109280153 109280156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109280396 109280489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109280777 109281251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109281619 109282060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109282518 109282575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 109282680 109282698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGAGGATTTGGAGGAAGATGTAAGGTTTATTGTGGATGAGACCTTGGACTTTGGGGGGCTGTCACCAT
CTGACAGCCGTGAGGAGGAAGACATAACAGTGTTGGTGACTCCAGAGAAACCACTTCGACGGGGCCTCTC
CCACCGAAGTGACCCAAATGCAGTGGCACCTGCCCCCCAGGGTGTGAGGCTCAGCCTAGGCCCCCTCAGT
CCAGAGAAGCTGGAGGAGATCCTCGATGAGGCCAACCGGCTGGCCGCTCAGCTGGAGCAGTGTGCCCTGC
AGGATCGGGAGAGCGCAGGCGAGGGCCTGGGGCCTCGCCGAGTGAAGCCCAGTCCTCGGCGGGAGACCTT
TGTGCTGAAGGATAGTCCTGTCCGAGACCTGCTGCCCACTGTGAACTCTTTGACGCGGAGCACCCCCTCC
CCAAGCAGCCTGACGCCTCGACTCCGGAGTAATGATAGGAAGGGGTCAGTCAGGGCTCTCCGGGCTACAT
CTGGAAAGAGGCCCTCCAACATGAAGAGGGAGTCACCCACTTGCAATCTGTTCCCTGCATCCAAAAGCCC
AGCATCTTCTCCTCTTACCCGATCGACTCCCCCAGTCCGGGGGAGAGCCGGGCCCAGTGGGAGAGCAGCA
GCCAGTGAGGAGACCAGAGCAGCCAAGTTGCGGGTGAGTGGGAGTGGGGAGTTTGTGGGATTGACCCTGA
AATTTCTCCACCCCTCTCCACCAGGCCCACCCACCCCCATCAGATCCGTCCTGGCCCCACAGCCTTCTAC
CAGCAACTCTCAACGCCTGCCCCGGCCGCAGGGAGCAGCTGCTAAATCTTCCAGTCAACTGCCCATTCCC
TCGGCCATCCCCAGGCCTGCCAGCCGAATGCCACTCACCAGCCGGAGTGTGCCACCTGGCAGAGGTGCCC
TACCTCCGGATTCTCTGTCAACTCGAAAAGGGCTTCCAAGACCAAGCACTGCAGGACACAGAGTGCGGGA
AAGTGGACACAAGGTTCCTGTTTCCCAGCGACTAAATCTTCCTGTCATGGGTGCCACTCGCAGCAATCTG
CAGCCCCCCAGGAAAGTGGCAGTCCCAGGACCTACCAGGTAA

Translation (363 aa):
MEDLEEDVRFIVDETLDFGGLSPSDSREEEDITVLVTPEKPLRRGLSHRSDPNAVAPAPQGVRLSLGPLS
PEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPRRETFVLKDSPVRDLLPTVNSLTRSTPS
PSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAA
ASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQPSTSNSQRLPRPQGAAAKSSSQLPIP
SAIPRPASRMPLTSRSVPPGRGALPPDSLSTRKGLPRPSTAGHRVRESGHKVPVSQRLNLPVMGATRSNL
QPPRKVAVPGPTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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