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Report for CCDS30077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30077.1 Public Mus musculus X Rhox4b 23 108 98 CCDS HistoryNCBI Gene:57737Re-query CCDS DB by CCDS ID:30077.1Re-query CCDS DB by GeneID:57737See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096458.4 ENSMUSP00000094197.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096458.4Link to Ensembl Protein Viewer:ENSMUSP00000094197.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096458Re-query CCDS DB by Protein ID:ENSMUSP00000094197
Original member Current member NCBI NM_021300.2 NP_067275.1 Accepted alive Link to Nucleotide Sequence:NM_021300.2Link to Protein Sequence:NP_067275.1Re-query CCDS DB by Nucleotide ID:NM_021300Re-query CCDS DB by Protein ID:NP_067275Link to BLAST:NP_067275.1

Chromosomal Locations for CCDS 30077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37432625 37432691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37432882 37433287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37435688 37435733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37437043 37437141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAGCATCAAAACACCAACTACCTACTTCATGAGGGACTTGGCAAGGACAAGGAAAAGTTGAATGGTG
GGAAGACACAGACAGTCTTACCACTGGATGGAGAGGGAAGAAATGAGGGAGAGAGTGTACTGGGCCAGTC
CGGAGCCGCAGCAGTGGAATGGGACAAAGCAGAAGAATTAAGTGGAGAAGGTGGGCCTGCTGCTGGTGAT
GCAGACCTCATGGATAACAGCAACCAAGAGGACCAGGACACCAGTGGCAGTGCCCAGGAGGAGGAGAAGC
TGCCAGAGGAGCCAGTTCTCAGGGATGCTGTGGTCATAGACAAAGTGCAGCCTATTCCAGTGCTGGTATC
TGGTGTGCGGCCTAAGTCAGTGTGGGTACAGCAGCGTAGCTTACACTACAATTTCCAATGGTGGCAGCTG
CAGGAGCTGGAGCGCATTTTCCAGCAGAATCACTTCATCCGTGCAGAGGAAAGAAGACATCTGGCAAGAT
GGATAGGTGTGAGTGAAGCCAGAGTTATGACATGGTTTAAGAAGAGGAGAGAGCACTTCAGAAGAGGACA
AAGTCAGTTAGGAATGAATGATGATGCCCCTGTGGGGTCCCACTCTACCTTTCTCTGA

Translation (205 aa):
MEHQNTNYLLHEGLGKDKEKLNGGKTQTVLPLDGEGRNEGESVLGQSGAAAVEWDKAEELSGEGGPAAGD
ADLMDNSNQEDQDTSGSAQEEEKLPEEPVLRDAVVIDKVQPIPVLVSGVRPKSVWVQQRSLHYNFQWWQL
QELERIFQQNHFIRAEERRHLARWIGVSEARVMTWFKKRREHFRRGQSQLGMNDDAPVGSHSTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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