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Report for CCDS29810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29810.1 Public Mus musculus 19 Lcor 23 108 98 CCDS HistoryNCBI Gene:212391Re-query CCDS DB by CCDS ID:29810.1Re-query CCDS DB by GeneID:212391See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067795.12 ENSMUSP00000067603.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067795.12Link to Ensembl Protein Viewer:ENSMUSP00000067603.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067795Re-query CCDS DB by Protein ID:ENSMUSP00000067603
Original member Current member EBI ENSMUST00000163929.1 ENSMUSP00000126441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163929.1Link to Ensembl Protein Viewer:ENSMUSP00000126441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163929Re-query CCDS DB by Protein ID:ENSMUSP00000126441
Original member Current member NCBI NM_172154.4 NP_742166.1 Accepted alive Link to Nucleotide Sequence:NM_172154.4Link to Protein Sequence:NP_742166.1Re-query CCDS DB by Nucleotide ID:NM_172154Re-query CCDS DB by Protein ID:NP_742166Link to BLAST:NP_742166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742166.1 433 Q6ZPI3 433 100% 0 0

Chromosomal Locations for CCDS 29810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41552499 41552736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41555608 41555701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41558311 41559280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGCAGCGAATGATCCAACAATTTGCTGCTGAATATACCTCAAAAACTAGCTCTACTCAGGACCCCAGCC
AGCCCAATAGCACAAAGAACCAAAGCCTGCCGAAAGCATCTCCAGTCACCACCTCTCCCACGGCTGCAAC
TACTCAGAACCCCGTGCTCAGCAAACTGCTCATGGCTGACCAAGACTCACCTCTGGACCTTACTGTCAGA
AAGTCTCAGTCAGAACCTAGTGAACAAGACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTA
GCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGGGCGACCTGGGAGACCCAG
CCAGTACCGCCCAGATGGACTTCGGAGTGGTGATGGGGTACCTCCAAGAAGCTTACAGGATGGAACCAGG
GAAGGCTTTGGACACTCCACATCACTCAAAGTTCCACTGGCTCGATCTCTGCAGATTAGTGAAGAACTAC
TGAGCAGAAACCAATTGTCCACGGCTGCCAGCCTTGGTCCGTCTGGATTACAGAATCACGGACAGCACTT
AATCTTATCCAGGGAAGCCTCTTGGGCAAAACCTCACTATGAATTCAGCCTCAGCCGAATGAAGTTCAGG
GGAAATGGTGCACTCAGCAACATTAGTGACCTTCCTTTCCTCGCAGAAAACTCTGCCTTCCCAAAAATGG
CACATCAAACAAAACAAGATGGAAAAAGGGACATGAGCCATTCATCTCCTGTAGATTTAAAGATACCACA
AGTTCGAGGAATGGATCTTTCTTGGGAGTCTCGCACTGGTGATCAGTACAGCTATAGCTCTTTGGTAATG
GGTTCACAAACGGAGAGCGCGCTTAGTAAAAAATTAAGGGCTATTCTTCCAAAACAAAATAGAAAAAGCA
TGTTAGATGCTGGACCTGATTCTTGGGGCTCAGATGCTGAGCAGTCTACCTCTGGACAGCCATATCCCAC
ATCGGATCAAGAAGGAGACCCTGGCTCCAAGCAGCCGCGGAAGAAAAGAGGGCGTTACAGACAGTACAAC
AGTGAGATACTGGAGGAAGCCATCTCGGTGGTTATGAGTGGAAAAATGAGTGTTTCCAAAGCTCAGAGTA
TTTATGGGATTCCCCACAGTACACTGGAGTACAAAGTAAAGGAGAGGCTGGGCACTTTGAAAAACCCTCC
AAAGAAAAAGATGAAATTAATGAGGTCGGAGGGGCCAGATGTTTCTGTAAAGATTGAATTAGATCCCCAG
GGAGAGGCAGCACAAAGTGCAAATGAATCAAAAACTGAGTAG

Translation (433 aa):
MQRMIQQFAAEYTSKTSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVR
KSQSEPSEQDGVLDLSTKKSPCASSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTR
EGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFSLSRMKFR
GNGALSNISDLPFLAENSAFPKMAHQTKQDGKRDMSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVM
GSQTESALSKKLRAILPKQNRKSMLDAGPDSWGSDAEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYN
SEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
GEAAQSANESKTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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