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Report for CCDS29568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29568.1 Public Mus musculus 19 Best1 23 108 98 CCDS HistoryNCBI Gene:24115Re-query CCDS DB by CCDS ID:29568.1Re-query CCDS DB by GeneID:24115See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117346.1 ENSMUSP00000113053.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117346.1Link to Ensembl Protein Viewer:ENSMUSP00000113053.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117346Re-query CCDS DB by Protein ID:ENSMUSP00000113053
Original member Current member NCBI NM_011913.2 NP_036043.2 Accepted alive Link to Nucleotide Sequence:NM_011913.2Link to Protein Sequence:NP_036043.2Re-query CCDS DB by Nucleotide ID:NM_011913Re-query CCDS DB by Protein ID:NP_036043Link to BLAST:NP_036043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036043.2 551 O88870 551 100% 0 0

Chromosomal Locations for CCDS 29568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9985386 9985422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9986197 9986371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9986651 9986994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9989122 9989273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9989602 9989682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9990474 9990626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9991637 9991714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9992057 9992211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9992766 9992999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9993228 9993322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9997027 9997178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGACTATCACCTACACAAACAAAGTAGCCAATGCCCGCCTCGGTTCGTTCTCGTCCCTCCTCCTGTGCT
GGCGAGGCAGCATCTACAAGCTGCTGTATGGAGAATTCCTTGTCTTCATATTCCTCTACTATTCCATCCG
TGGACTCTACAGAATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGAC
AGCTACATTCAGCTCATCCCTATATCCTTCGTTCTGGGTTTCTATGTTACATTGGTGGTGAGCCGCTGGT
GGAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAA
GGATGAGGAAGGCCGTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCCTGGGCCAAGTGCTCATCCTG
CGCAGCATCAGCACCTCGGTCTACAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGCAGGTTTTATGA
CCCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTG
GTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCGTCCTGCTCCAGAGCCTG
ATGAATGAGGTGTGTACTTTGCGTACTCAGTGTGGACAGCTGTATGCCTACGACTGGATAAGTATCCCAT
TGGTGTACACACAGGTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTT
TCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAA
TTCTTATTCTACATGGGCTGGCTGAAGGTGGCAGAACAGCTCATCAACCCCTTCGGGGAGGACGATGATG
ATTTTGAGACTAACTGGATCATTGACAGAAACCTGCAGGTGTCCCTGTTGTCCGTGGATGGGATGCACCA
GAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCT
TCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAGCCTAAAGAAAGAAGACTTAG
AGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTT
CTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTTCTAAG
AACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGG
GTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAG
CAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAGGTGATGGGCCTTCCACAGATTACCAA
GAAATCTGTCACATGAAAAAGAAAACTGTGGAGTTTAACTTGAACATTCCAGAGAGCCCCACAGAACATC
TTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTA
TCCCTACAGGGATGAAGCTGGCACCAAACCTGTTCTCTATGAGTGA

Translation (551 aa):
MTITYTNKVANARLGSFSSLLLCWRGSIYKLLYGEFLVFIFLYYSIRGLYRMVLSSDQQLLFEKLALYCD
SYIQLIPISFVLGFYVTLVVSRWWSQYENLPWPDRLMIQVSSFVEGKDEEGRLLRRTLIRYAILGQVLIL
RSISTSVYKRFPTLHHLVLAGFMTHGEHKQLQKLGLPHNTFWVPWVWFANLSMKAYLGGRIRDTVLLQSL
MNEVCTLRTQCGQLYAYDWISIPLVYTQVVTVAVYSFFLACLIGRQFLNPNKDYPGHEMDLVVPVFTILQ
FLFYMGWLKVAEQLINPFGEDDDDFETNWIIDRNLQVSLLSVDGMHQNLPPMERDMYWNEAAPQPPYTAA
SARSRRHSFMGSTFNISLKKEDLELWSKEEADTDKKESGYSSTIGCFLGLQPKNYHLPLKDLKTKLLCSK
NPLLEGQCKDANQKNQKDVWKFKGLDFLKCVPRFKRRGSHCGPQAPSSHPTEQSAPSSSDTGDGPSTDYQ
EICHMKKKTVEFNLNIPESPTEHLQQRRLDQMSTNIQALMKEHAESYPYRDEAGTKPVLYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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