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Report for CCDS29556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29556.1 Public Mus musculus 19 Ints5 23 108 98 CCDS HistoryNCBI Gene:109077Re-query CCDS DB by CCDS ID:29556.1Re-query CCDS DB by GeneID:109077See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096249.6 ENSMUSP00000093968.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096249.6Link to Ensembl Protein Viewer:ENSMUSP00000093968.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000096249Re-query CCDS DB by Protein ID:ENSMUSP00000093968
Original member Current member NCBI NM_176843.3 NP_789813.1 Accepted alive Link to Nucleotide Sequence:NM_176843.3Link to Protein Sequence:NP_789813.1Re-query CCDS DB by Nucleotide ID:NM_176843Re-query CCDS DB by Protein ID:NP_789813Link to BLAST:NP_789813.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789813.1 1018 Q8CHT3 1018 100% 0 0

Chromosomal Locations for CCDS 29556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8893069 8893148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8894759 8897735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGTCCGCGTTGTGCGACCCTCCCGGGGCCCCAGGGCCACCCGGGCCTGCCCCCGCCACCCACGGTCCCG
CGCCTCTCAGTGCTCAGGAGCTGTCCCAAGAAATCAAGGCTTTTTTGACCGGTGTAGACCCTATTCTGGG
CCACCAGCTCTCAGCTCGTGAACATGCTCGATGTGGTCTTCTCTTGCTCCGTTCTTTGCCACCTGCTCGG
GCTGCTGTGTTGGACCACTTGAGAGGTGTTTTTGATGAGAGTGTCCGGGCCCACCTAGCTGCCCTAGAAG
AAAGTCCTGTGGCTGGTCCACCTCACCTCCGTCCACCTCCACCATCCCATGTCCCTACTGGTGGACCTGG
CTTAGAGGATGTGGTGCATGAAGTGCAGCAGGTGCTGTGTGAGTTTATCCGGGCCAACCCAAAGGCCTGG
GCACCCGTGATTAGTGCATGGTCCATTGACCTCATGGGACAACTGAGCAGCACATATTCAGGTCAGCATC
AGCGTGTTCCCCATGCCACTGGCTCTCTCAATGAACTGCTGCAGCTGTGGATGGGCTGCAGGGCCACCCG
CACATTAATGGACATCTATGTGCAGTGCCTCTCGGCCCTCATTGGTAGCTGCCCAGATGCATGTGTGGAT
GCCTTGCTAGACACTTCTGTCCAGCATTCCCCACACTTTGACTGGGTTGTGGCCCATATTGGCTCTTCTT
TTCCTGGCACCATCATCTCCCGAGTCCTATCTTGTGGCCTTAAGGACTTCTGTGTCCATAGTGGGGCTGG
AGGAGGAGCTAGTGCTTGTGGAAACTCTTCTCAACCCCCCTCTACAGACCCCTTCCCTGGATCTCCTGCC
ATCCCTGGGGAAAAACGGGTACCCAAGATTGCCTCAGTTGTAGGCATCCTAGGGCACCTGGCTTCCCGCC
ATGGAGACAGCATCCGACGGGAACTGTTGCGCATGTTTCATGATAGTTTGGCAGGGGGTTCTGGGGGCCG
GAATGGAGAGCCCTCTCTTCAGGCCACAGTTCCCTTCCTACTGCAGCTGGCAGTCATGTCACCAGCTTTG
CTCGGCACAGTATCTGGAGAACTTGTGGACTGCCTCAAGCCCCCAGCAGTGCTAAGCCAGCTGCAACAAC
ACCTGCAGGGGTTCCCCAGAGAAGAGCTAGACAACATGCTAAACCTGGCTGTGCATCTAGTGAGCCAGGC
CTCTGGGACTGGTGCCTACCGCCTGCTGCAGTTCTTAGTAGACACAGCTATGCCTGCTTCAGTTATTACT
ACCCAGGGCCTGGCTGTGCCAGACACCGTGAGAGAGGCCTGTGACCGGCTGATCCAGCTGCTATTGCTAC
ATCTACAAAAACTAGTTCATCATCGGGGAGGGTCTCCTGGAGAAGGGGTGCTGGGCCCACCCCCACCTCC
TCGTCCAGTGCCCTTTCTTGATGCATTACGAAACCATGTTGGAGAACTGTGTGGAGAGACATTACGGCTA
GAACGGAAGCGCTTCCTCTGGCAACACCAGCTCCTGGGCCTACTGTCTGTCTATACACGACCTAGCTGTG
GACCTGAGGCCTTGGGTCATCTACTGAGCAGAGCCAGAAGCCCTGAAGAGTTGAGTTTGGCAACCCAGCT
ATATGCAGGGCTAGTGGTCAGTCTCTCTGGCCTTCTTCCCCTGGCCTTCCGAAGCTGCCTGGCTCGAGTG
CATGCAGGGACTTTACAGCCTCCCTTCACAGCCCGGTTTCTTCGAAATTTGGCCTTGTTGGTGGGGTGGG
AGCAGCAGGGTGGTGAGGGCCCTTCAGCCTTAGGGGCCCGGTTTGGGGAGTCTGCCTCAGCTCACCTGGC
TGATCTGGCTCCTCTCCTACTACACCCAGAGGAGGAAGTAGCTGAAGCTGCTGCCTCCCTCCTTGCAATA
TGTCCCTTTCCTTCTGAAGCCCTGTCCCCTTCCCAACTATTGGGACTAGTGAGAGCTGGAGTACACCACT
TCTTCTCTTCTCTAAGGCTGCATGGCCCTCCTGGTGTGGCTTCAGCCTCTCAGCTTCTTACCCGCCTTTC
TCAGACTTCCCCAGCTGGGCTCAAGGCTGTCCTACAGCTGCTTGTAGAGGGAGCCTTACATCGGGGCAAC
ACAGAACTATTTGGAGGGGAAATGGATGGAGACAATGAGACCCTCTCAATTGTCTCAACCCCTTTGGCTT
CTGCCTCATTGTTGGACATTAACCGGAGGCATACTGCAGCAGTGCCGGGTCCTGGAGGGATCTGGTCAGT
TTTCCATGCTGGAGTTATCGGCCGTGGCTTAAAGCCACCTAAAATTGTTCAATCTCGAAACCATCAAGAA
GTGATCTATAACACCCAGAGCCTCGTTAGCCTCCTAGTGCACTGCTGCAGCGCATCAGGGAACAGCGAGC
GTGAGGGTTGCTGGGGGGCTCCCACCCTGAGCCCAGAGGCAGCCAAAGCAGTTGCGGTGACCTTAGTGGA
GAGCGTGTGTCCTGATGCAGCTGGTGCTGAGCTGGCCTGGCCCCCAGAGGATCATGCACGAGCCACCGTG
GAGCGGGATCTCCGAATTGGTAGGCGCTTCCGGGAACAACCTCTGCTGTTTGAGCTTTTGAAGCTGGTAG
CAGCTGCTCCCCCAGCCCTGTGCTACTGCTCCGTGCTGCTGCGGGGGCTGCTGGCTGCCCTCTTGAGCCA
TTGGGAAGCCTCTCGACACCCTGATACAACCCACTCCCCCTGGCATCTGGAGGCATCCTGTATCCTGGTG
GCTGTCATGGCTGAGGGAAGCCTCTTGCCACCAGCCCTGGGTAATATGCACGAGGTATTTAGCCAACTGG
CACCTTTTGAAGTGCGTCTGTTGCTGCTTAGTGTCTGGGGTTTTCTTCGGGAGCATGGGCCCTTGCCCCA
GAAGTTCATCTTCCAGTCTGAACGTGGCCGCTTCATCCGGGACTTTGCCAGGGAGGGTGGAGCTGAAGGA
GGACCACATCTGTCTGTGCTGCACAGTGTCCTCCACCGCAACATCGATCGCCTGGGGCTCTTCTCTGGCC
GCTTTCAAGCACCTCCGCCATCCACTCTGCTTCGGCAGGGGACTTGA

Translation (1018 aa):
MSALCDPPGAPGPPGPAPATHGPAPLSAQELSQEIKAFLTGVDPILGHQLSAREHARCGLLLLRSLPPAR
AAVLDHLRGVFDESVRAHLAALEESPVAGPPHLRPPPPSHVPTGGPGLEDVVHEVQQVLCEFIRANPKAW
APVISAWSIDLMGQLSSTYSGQHQRVPHATGSLNELLQLWMGCRATRTLMDIYVQCLSALIGSCPDACVD
ALLDTSVQHSPHFDWVVAHIGSSFPGTIISRVLSCGLKDFCVHSGAGGGASACGNSSQPPSTDPFPGSPA
IPGEKRVPKIASVVGILGHLASRHGDSIRRELLRMFHDSLAGGSGGRNGEPSLQATVPFLLQLAVMSPAL
LGTVSGELVDCLKPPAVLSQLQQHLQGFPREELDNMLNLAVHLVSQASGTGAYRLLQFLVDTAMPASVIT
TQGLAVPDTVREACDRLIQLLLLHLQKLVHHRGGSPGEGVLGPPPPPRPVPFLDALRNHVGELCGETLRL
ERKRFLWQHQLLGLLSVYTRPSCGPEALGHLLSRARSPEELSLATQLYAGLVVSLSGLLPLAFRSCLARV
HAGTLQPPFTARFLRNLALLVGWEQQGGEGPSALGARFGESASAHLADLAPLLLHPEEEVAEAAASLLAI
CPFPSEALSPSQLLGLVRAGVHHFFSSLRLHGPPGVASASQLLTRLSQTSPAGLKAVLQLLVEGALHRGN
TELFGGEMDGDNETLSIVSTPLASASLLDINRRHTAAVPGPGGIWSVFHAGVIGRGLKPPKIVQSRNHQE
VIYNTQSLVSLLVHCCSASGNSEREGCWGAPTLSPEAAKAVAVTLVESVCPDAAGAELAWPPEDHARATV
ERDLRIGRRFREQPLLFELLKLVAAAPPALCYCSVLLRGLLAALLSHWEASRHPDTTHSPWHLEASCILV
AVMAEGSLLPPALGNMHEVFSQLAPFEVRLLLLSVWGFLREHGPLPQKFIFQSERGRFIRDFAREGGAEG
GPHLSVLHSVLHRNIDRLGLFSGRFQAPPPSTLLRQGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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