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Report for CCDS29509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29509.1 Public Mus musculus 19 Esrra 23 108 98 CCDS HistoryNCBI Gene:26379Re-query CCDS DB by CCDS ID:29509.1Re-query CCDS DB by GeneID:26379See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025906.10 ENSMUSP00000025906.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025906.10Link to Ensembl Protein Viewer:ENSMUSP00000025906.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025906Re-query CCDS DB by Protein ID:ENSMUSP00000025906
Original member NCBI NM_007953.2 NP_031979.2 Updated not alive Link to Nucleotide Sequence:NM_007953.2Link to Protein Sequence:NP_031979.2Re-query CCDS DB by Nucleotide ID:NM_007953Re-query CCDS DB by Protein ID:NP_031979
Current member NCBI NM_007953.3 NP_031979.2 Accepted alive Link to Nucleotide Sequence:NM_007953.3Link to Protein Sequence:NP_031979.2Re-query CCDS DB by Nucleotide ID:NM_007953Re-query CCDS DB by Protein ID:NP_031979Link to BLAST:NP_031979.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031979.2 422 O08580 422 100% 0 0

Chromosomal Locations for CCDS 29509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6911751 6912010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6912355 6912624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6912716 6912883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6913820 6913948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6914079 6914195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6920063 6920387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGTCCAGCCAGGTGGTGGGCATCGAGCCTCTCTACATCAAGGCAGAGCCAGCCAGTCCTGACAGTCCAA
AGGGTTCCTCAGAGACTGAGACTGAACCCCCGGTGACCCTGGCCTCTGGTCCAGCTCCAGCCCGCTGCCT
TCCAGGGCACAAGGAGGAGGAGGATGGGGAGGGGGCAGGGTCTGGTGAGCAGGGCAGTGGGAAGCTAGTG
CTCAGCTCTCTACCCAAACGCCTCTGCCTGGTCTGTGGGGATGTGGCCTCTGGCTACCACTACGGTGTGG
CATCCTGTGAGGCCTGCAAAGCCTTCTTCAAGAGGACCATCCAGGGGAGCATCGAGTACAGCTGTCCGGC
CTCCAATGAGTGTGAGATCACCAAGCGGAGACGCAAGGCCTGTCAGGCCTGCCGCTTCACCAAGTGCCTG
CGGGTGGGCATGCTCAAGGAGGGTGTGCGTCTGGACCGTGTCCGCGGCGGACGGCAGAAGTACAAACGGC
GGCCAGAGGTGGACCCTTTGCCTTTCCCGGGCCCCTTCCCTGCTGGACCTCTGGCAGTAGCTGGAGGACC
CAGGAAGACAGCCCCAGTGAACGCTCTGGTGTCGCATCTGCTGGTGGTTGAACCTGAGAAGCTGTACGCC
ATGCCTGACCCAGCAAGCCCCGATGGACACCTCCCCGCTGTGGCCACTCTCTGTGACCTTTTTGATCGAG
AGATAGTGGTCACCATCAGCTGGGCCAAGAGCATCCCAGGCTTCTCCTCACTGTCACTGTCTGACCAGAT
GTCAGTACTGCAGAGTGTGTGGATGGAAGTGCTGGTGCTGGGTGTGGCCCAGCGCTCACTGCCACTGCAG
GATGAGCTGGCCTTTGCTGAGGACCTGGTCCTAGATGAAGAGGGGGCACGGGCAGCTGGCCTGGGGGATC
TGGGGGCAGCCCTGCTGCAGCTGGTTCGGCGACTGCAAGCTCTTCGGCTGGAGCGGGAGGAGTACGTCCT
GCTGAAAGCTCTGGCCCTTGCCAATTCTGACTCTGTGCACATTGAAGATGCTGAGGCTGTGGAGCAGCTG
CGCGAAGCCCTGCATGAGGCCCTGCTGGAGTATGAAGCTGGCCGGGCTGGCCCTGGAGGGGGTGCTGAGC
GGAGGCGTGCAGGCAGGCTGCTGCTTACGCTGCCACTCCTCCGCCAGACAGCAGGCAAAGTCCTGGCCCA
TTTCTATGGGGTGAAGCTGGAGGGCAAGGTGCCCATGCACAAGCTGTTTTTGGAAATGCTTGAGGCCATG
ATGGACTGA

Translation (422 aa):
MSSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVTLASGPAPARCLPGHKEEEDGEGAGSGEQGSGKLV
LSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCL
RVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVNALVSHLLVVEPEKLYA
MPDPASPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ
DELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQL
REALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAM
MD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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