NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29283.1 Public Mus musculus 18 Pde6a 23 108 98 CCDS HistoryNCBI Gene:225600Re-query CCDS DB by CCDS ID:29283.1Re-query CCDS DB by GeneID:225600See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025468.14 ENSMUSP00000025468.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025468.14Link to Ensembl Protein Viewer:ENSMUSP00000025468.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025468Re-query CCDS DB by Protein ID:ENSMUSP00000025468
Original member Current member NCBI NM_146086.3 NP_666198.1 Accepted alive Link to Nucleotide Sequence:NM_146086.3Link to Protein Sequence:NP_666198.1Re-query CCDS DB by Nucleotide ID:NM_146086Re-query CCDS DB by Protein ID:NP_666198Link to BLAST:NP_666198.1

Chromosomal Locations for CCDS 29283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61220605 61221078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61231348 61231500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61232832 61232921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61234639 61234779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61238409 61238483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61245541 61245605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61249946 61250012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61253130 61253177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61253667 61253816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61254303 61254446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61256984 61257049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61257181 61257327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61258206 61258313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61262416 61262525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61263923 61264010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61264173 61264273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61264958 61265065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61281521 61281584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61281828 61281902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61284006 61284089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61285913 61286060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61288133 61288209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGGGTGAGGTGACAGCAGAGGAGGTAGAAAAGTTCCTGGATTCAAATATTGGCTTTGCCAAACAGTACT
ATAACTTTCACTACCGGGGGAAGGTCATCTCAGACCTCCTCGGGGCCAAGGAGGCAGCCGTGGACTTCAG
CAACTACCACGATGTGAACAGCGTAGAGGAGAGTGAGATCATCTTTGACCTCCTGCGGGACGTTCAGGAG
AACTTACAGGCTGAGAAATGCACATTCAATGTCATGAAGAAGCTCTGCTTCCTCCTGCGGGCTGACCGCA
TGAGCCTGTTCATGTACAGGACCCGCAACGGGATCGCCGAGTTGGCCACTAGGCTCTTCAATGTCCACAA
GGATGCCGTCCTAGAGGACTGCTTGGTGATGCCCGACTCCGAGATTGTCTTCCCTCTGGACATGGGTGTC
GTGGGCCACGTCGCACACTCCAAAAAGATTGCCAATGTCCCCAACACAGAAGAGGATGAGCATTTCTGTG
ACTTCGTGGACAATCTCACAGAATATCAGACCAAAAACATCCTGGCTTCCCCCATCATGAATGGGAAGGA
TGTGGTAGCCATAATCATGGCTGTGAATAAAATAGATGAACCCCACTTCACCAAGAGAGATGAAGAGATT
CTTCTCAAGTACCTCAACTTTGTGAACCTGATCATGAAGGTATTCCACCTGAGCTACCTGCACAACTGTG
AGACTCGTCGCGGCCAGATATTGCTGTGGTCTGGGAGCAAGGTCTTTGAGGAGCTCACGGATATAGAGAG
GCAGTTCCACAAGGCCCTGTACACGGTCCGGGCTTTCCTCAACTGTGACAGATACTCCGTAGGACTCTTA
GACATGACCAAACAGAAGGAATTTTTTGATGTGTGGCCAGTTCTGATGGGCGAGGCTCCAGCTTACTCTG
GTCCCAGGACTCCAGACGGAAGGGAAATTAACTTCTACAAGGTCATTGACTACATCCTGCACGGCAAAGA
AGACATCAAAGTCATCCCGAACCCACCCGCTGACCACTGGGCTCTAGTGAGTGGTCTCCCCACTTACGTG
GCTCAAAATGGTCTGATCTGCAATATAATGAATGCGCCTGCAGAGGACTTTTTTGAATTCCAGAAAGAGC
CTCTGGATGAGTCTGGGTGGATGATTAAAAATGTACTCTCCATGCCCATCGTCAACAAGAAGGAAGAGAT
CGTCGGCGTGGCCACATTTTACAACCGCAAAGATGGGAAGCCCTTCGACGATATGGACGAGACCCTCATG
GAGTCTTTGACTCAGTTTCTGGGATGGTCAGTCTTAAACCCTGACACCTACGAGTCCATGAACAAGCTCG
AGAACAGGAAGGATATCTTCCAGGACATCGTGAAATATCACGTGAAGTGTGATAACGAAGAAATCCAGAA
GATCTTGAAAACCAGAGAGGTGTACGGCAAAGAGCCGTGGGAATGCGAGGAGGAGGAGCTGGCTGAGATC
CTGCAAGGAGAACTTCCAGACGCGGAGTCATACGAAATCAACAAGTTCCACTTCAGCGACCTGCCACTCA
CGGAGCTGGAGCTGGTGAAGTGCGGCATCCAGATGTACTACGAGCTCAGAGTGGTGGACAAGTTCCACAT
CCCGCAAGAGGCCCTGGTGCGCTTCATGTATTCGCTAAGCAAAGGCTACCGGAGAATCACTTACCACAAC
TGGCGGCATGGCTTCAACGTGGGGCAGACCATGTTCTCCTTGCTGGTGACAGGAAAGCTGAAACGGTACT
TCACTGATCTAGAGGCCTTGGCCATGGTCACTGCTGCCTTCTGTCATGACATCGACCACAGAGGCACGAA
CAACCTCTACCAGATGAAATCACAGAACCCCCTGGCCAAGCTCCATGGGTCCTCCATCTTGGAAAGGCAT
CATTTGGAGTTTGGCAAAACACTCCTGAGAGATGAGAGCCTGAATATCTTCCAGAACCTGAATCGCCGGC
AGCATGAGCACGCGATCCACATGATGGACATCGCGATCATTGCCACAGACCTTGCCTTGTATTTCAAGAA
AAGGACCATGTTCCAGAAGATTGTGGATCAGTCAAAGACATATGAGAGTACCCAGGAGTGGACCCAGTAC
ATGATGCTGGAGCAGACACGGAAGGAAATTGTGATGGCCATGATGATGACCGCCTGTGATCTCTCAGCCA
TCACCAAACCCTGGGAGGTACAGAGCAAGGTGGCTCTGCTGGTGGCTGCTGAATTCTGGGAGCAAGGTGA
CCTGGAGCGCACAGTGCTGCAGCAGAATCCCATTCCCATGATGGACAGAAACAAGGCGGATGAGCTCCCC
AAGCTTCAAGTCGGCTTCATCGACTTTGTGTGCACTTTTGTCTATAAGGAGTTCTCCCGATTTCATGAGG
AGATTACACCCATGCTGGATGGGATCACTAACAACCGCAAGGAATGGAAGGCGCTGGCTGATGAGTACGA
AGCCAAGATGAAGGCCCTGGAGGAGGAGAAGCAGAAGCAGCAGGCAGCCAAGCAAGCTGCTTCCGGGAAC
CAGCCAGGAGGGAACCCCACTCCAGGGGGTGCACCTGCATCTAAGTCCTGTTGCATCCAGTAG

Translation (860 aa):
MGEVTAEEVEKFLDSNIGFAKQYYNFHYRGKVISDLLGAKEAAVDFSNYHDVNSVEESEIIFDLLRDVQE
NLQAEKCTFNVMKKLCFLLRADRMSLFMYRTRNGIAELATRLFNVHKDAVLEDCLVMPDSEIVFPLDMGV
VGHVAHSKKIANVPNTEEDEHFCDFVDNLTEYQTKNILASPIMNGKDVVAIIMAVNKIDEPHFTKRDEEI
LLKYLNFVNLIMKVFHLSYLHNCETRRGQILLWSGSKVFEELTDIERQFHKALYTVRAFLNCDRYSVGLL
DMTKQKEFFDVWPVLMGEAPAYSGPRTPDGREINFYKVIDYILHGKEDIKVIPNPPADHWALVSGLPTYV
AQNGLICNIMNAPAEDFFEFQKEPLDESGWMIKNVLSMPIVNKKEEIVGVATFYNRKDGKPFDDMDETLM
ESLTQFLGWSVLNPDTYESMNKLENRKDIFQDIVKYHVKCDNEEIQKILKTREVYGKEPWECEEEELAEI
LQGELPDAESYEINKFHFSDLPLTELELVKCGIQMYYELRVVDKFHIPQEALVRFMYSLSKGYRRITYHN
WRHGFNVGQTMFSLLVTGKLKRYFTDLEALAMVTAAFCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERH
HLEFGKTLLRDESLNIFQNLNRRQHEHAIHMMDIAIIATDLALYFKKRTMFQKIVDQSKTYESTQEWTQY
MMLEQTRKEIVMAMMMTACDLSAITKPWEVQSKVALLVAAEFWEQGDLERTVLQQNPIPMMDRNKADELP
KLQVGFIDFVCTFVYKEFSRFHEEITPMLDGITNNRKEWKALADEYEAKMKALEEEKQKQQAAKQAASGN
QPGGNPTPGGAPASKSCCIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH