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Report for CCDS29165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29165.1 Public Mus musculus 18 Hars2 23 108 98 CCDS HistoryNCBI Gene:70791Re-query CCDS DB by CCDS ID:29165.1Re-query CCDS DB by GeneID:70791See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152954.7 ENSMUSP00000117231.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152954.7Link to Ensembl Protein Viewer:ENSMUSP00000117231.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152954Re-query CCDS DB by Protein ID:ENSMUSP00000117231
Original member Current member NCBI NM_080636.2 NP_542367.1 Accepted alive Link to Nucleotide Sequence:NM_080636.2Link to Protein Sequence:NP_542367.1Re-query CCDS DB by Nucleotide ID:NM_080636Re-query CCDS DB by Protein ID:NP_542367Link to BLAST:NP_542367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542367.1 505 Q99KK9 505 100% 0 0

Chromosomal Locations for CCDS 29165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36783393 36783494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36785565 36785642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36785869 36785988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36786111 36786206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36787502 36787627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36787899 36788006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36788166 36788264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36788577 36788670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36789157 36789284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36789367 36789609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36790134 36790250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36790469 36790615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36791070 36791129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCCCCACCTGGGGCCACTGCGTCGCAGGGCCTGGGCTGCGCTGCTCGGCCAGCTCCTGCGACCTCCCA
GCACTGTGTGCACCCGCGGCTGTCATAGCCAGGTTGCAAAGGCAGTGTTAACGTCTGAACAACTGAAATC
CCATCAAGAGAAGCCGAATTTTGTCATCAAGGTTCCAAAGGGCACCAGGGATTTAAGTCCTCAACAGATG
GTTGTGAGGGAGAAAATCCTCGATAAGATTATCAGCTGTTTCAAACGTCATGGGGCGAAGGGGTTGGATA
CACCAGCGTTTGAGCTAAAAGAAATGCTCACCGAGAAGTATGAAGACAACTTCGGCCTCATGTATGATTT
GAAGGATCAAGGTGGAGAGTTGTTGTCTCTGCGCTATGACCTTACTGTCCCTTTTGCTCGATATCTGGCC
ATGAATAAACTGAAGAAAATGAAACGATACCAAGTTGGAAAGGTCTGGAGGCGAGAGAGCCCAGCTATAG
CCCAGGGCCGCTACCGGGAGTTCTGCCAGTGTGATTTTGACATTGCTGGTGAGTTTGACCCAATGATCCC
TGATGCAGAGTGTTTGAGGATCATGTGTGAAATCCTAAGTGGACTGCAGCTGGGGGACTTTCTCATTAAG
GTAAATGACCGTCGGGTTGTAGATGGGATATTTGCTGTCTGTGGTGTTCCTGAGAGCAAGCTCCGAACCA
TCTGCTCCTCAATGGACAAACTAGACAAGATGTCTTGGGAAGGCGTGAGGCATGAGATGGTGGCAAAGAA
AGGTCTAGCTCCCGAGGTGGCCGATCGAATTGGGGACTTCGTCCAATATCATGGGGGGATATCCCTGGTT
GAGGACTTGTTCAAGGATCCCAGACTATCCCAAAGCCAGCTGGCCTTGCAGGGCCTAGGGGACCTGAAGC
TGCTCTTTGAATACCTGAGGTTATTTGGAATTGCTGATAAGATCTCCCTTGATCTGAGTCTGGCCCGGGG
CCTGGACTATTATACTGGAGTGATTTATGAAGCAGTACTGCTAGAGTCTCCAGCTCAGGCTGGAAAGGAA
ACTCTGAGTGTGGGTAGTGTGGCTGCTGGTGGGCGCTATGACAATCTGGTAGCCCAGTTTGATCCCAAGG
GCCATCACGTGCCTTGTGTGGGGTTGAGCATTGGAGTAGAGAGAATCTTCTACCTTGTGGAACAGAAGAT
GAAGATGTCTGGTGAGAAGGTTCGCACCACAGAGACCCAAGTGTTTGTGGCCACACCCCAGAAGAACTTT
CTCCAAGAACGTTTGAAGATAATTGCAGAGCTTTGGGATGCCGGGATCAAGGCAGAGATGCTTTATAAAA
ACAACCCTAAACTGTTAACCCAGCTGCACTATTGTGAGAAAGCAGACATTCCTCTGATGGTCATTATTGG
TGAGCAAGAGCGGAATGAAGGTGTCATCAAGCTCCGTTCCGTGGCCAGCAGAGAAGAAGTGACCATTAAT
CGAGAAAGTCTCGTGGCTGAAATTCAGAAGCGACTGTCTGAGTCTTGA

Translation (505 aa):
MPHLGPLRRRAWAALLGQLLRPPSTVCTRGCHSQVAKAVLTSEQLKSHQEKPNFVIKVPKGTRDLSPQQM
VVREKILDKIISCFKRHGAKGLDTPAFELKEMLTEKYEDNFGLMYDLKDQGGELLSLRYDLTVPFARYLA
MNKLKKMKRYQVGKVWRRESPAIAQGRYREFCQCDFDIAGEFDPMIPDAECLRIMCEILSGLQLGDFLIK
VNDRRVVDGIFAVCGVPESKLRTICSSMDKLDKMSWEGVRHEMVAKKGLAPEVADRIGDFVQYHGGISLV
EDLFKDPRLSQSQLALQGLGDLKLLFEYLRLFGIADKISLDLSLARGLDYYTGVIYEAVLLESPAQAGKE
TLSVGSVAAGGRYDNLVAQFDPKGHHVPCVGLSIGVERIFYLVEQKMKMSGEKVRTTETQVFVATPQKNF
LQERLKIIAELWDAGIKAEMLYKNNPKLLTQLHYCEKADIPLMVIIGEQERNEGVIKLRSVASREEVTIN
RESLVAEIQKRLSES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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