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Report for CCDS2914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2914.1 Public Homo sapiens 3 FOXP1 24 110 108 CCDS HistoryNCBI Gene:27086Re-query CCDS DB by CCDS ID:2914.1Re-query CCDS DB by GeneID:27086See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318789.11 ENSP00000318902.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318789.11Link to Ensembl Protein Viewer:ENSP00000318902.5Re-query CCDS DB by Nucleotide ID:ENST00000318789Re-query CCDS DB by Protein ID:ENSP00000318902
Original member Current member EBI ENST00000498215.7 ENSP00000418102.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498215.7Link to Ensembl Protein Viewer:ENSP00000418102.1Re-query CCDS DB by Nucleotide ID:ENST00000498215Re-query CCDS DB by Protein ID:ENSP00000418102
Original member Current member EBI ENST00000649631.1 ENSP00000496990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649631.1Link to Ensembl Protein Viewer:ENSP00000496990.1Re-query CCDS DB by Nucleotide ID:ENST00000649631Re-query CCDS DB by Protein ID:ENSP00000496990
Original member Current member EBI ENST00000648380.1 ENSP00000497344.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648380.1Link to Ensembl Protein Viewer:ENSP00000497344.1Re-query CCDS DB by Nucleotide ID:ENST00000648380Re-query CCDS DB by Protein ID:ENSP00000497344
Original member Current member EBI ENST00000649528.3 ENSP00000497369.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649528.3Link to Ensembl Protein Viewer:ENSP00000497369.1Re-query CCDS DB by Nucleotide ID:ENST00000649528Re-query CCDS DB by Protein ID:ENSP00000497369
Original member Current member EBI ENST00000650068.2 ENSP00000497454.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650068.2Link to Ensembl Protein Viewer:ENSP00000497454.2Re-query CCDS DB by Nucleotide ID:ENST00000650068Re-query CCDS DB by Protein ID:ENSP00000497454
Original member Current member EBI ENST00000647725.1 ENSP00000497585.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647725.1Link to Ensembl Protein Viewer:ENSP00000497585.1Re-query CCDS DB by Nucleotide ID:ENST00000647725Re-query CCDS DB by Protein ID:ENSP00000497585
Original member Current member NCBI NM_001244814.3 NP_001231743.1 Accepted alive Link to Nucleotide Sequence:NM_001244814.3Link to Protein Sequence:NP_001231743.1Re-query CCDS DB by Nucleotide ID:NM_001244814Re-query CCDS DB by Protein ID:NP_001231743Link to BLAST:NP_001231743.1
Original member Current member NCBI NM_001244816.2 NP_001231745.1 Accepted alive Link to Nucleotide Sequence:NM_001244816.2Link to Protein Sequence:NP_001231745.1Re-query CCDS DB by Nucleotide ID:NM_001244816Re-query CCDS DB by Protein ID:NP_001231745Link to BLAST:NP_001231745.1
Original member Current member NCBI NM_001349338.3 NP_001336267.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001349338.3Link to Protein Sequence:NP_001336267.1Re-query CCDS DB by Nucleotide ID:NM_001349338Re-query CCDS DB by Protein ID:NP_001336267Link to BLAST:NP_001336267.1
Original member Current member NCBI NM_001349340.3 NP_001336269.1 Accepted alive Link to Nucleotide Sequence:NM_001349340.3Link to Protein Sequence:NP_001336269.1Re-query CCDS DB by Nucleotide ID:NM_001349340Re-query CCDS DB by Protein ID:NP_001336269Link to BLAST:NP_001336269.1
Original member Current member NCBI NM_032682.6 NP_116071.2 Accepted alive Link to Nucleotide Sequence:NM_032682.6Link to Protein Sequence:NP_116071.2Re-query CCDS DB by Nucleotide ID:NM_032682Re-query CCDS DB by Protein ID:NP_116071Link to BLAST:NP_116071.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231743.1 677 Q9H334-1 677 100% 0 0
NP_001231745.1 677 Q9H334-1 677 100% 0 0
NP_001336267.1 677 Q9H334-1 677 100% 0 0
NP_001336269.1 677 Q9H334-1 677 100% 0 0
NP_116071.2 677 Q9H334-1 677 100% 0 0

Chromosomal Locations for CCDS 2914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 70959247 70959391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70965890 70966056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70970736 70970805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70972555 70972676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70976941 70977042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70977643 70977722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70977828 70978029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 70987994 70988077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71000972 71001059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71015549 71015653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71041328 71041532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71046942 71047095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71052537 71052626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71053636 71053773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71112536 71112637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 71198202 71198381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGATGCAAGAATCTGGGACTGAGACAAAAAGTAACGGTTCAGCCATCCAGAATGGGTCGGGCGGCAGCA
ACCACTTACTAGAGTGCGGCGGTCTTCGGGAGGGGCGGTCCAACGGAGAGACGCCGGCCGTGGACATCGG
GGCAGCTGACCTCGCCCACGCCCAGCAGCAGCAGCAACAGGCACTTCAGGTGGCAAGACAGCTCCTTCTT
CAGCAGCAACAGCAGCAGCAAGTTAGTGGATTAAAATCTCCCAAGAGGAATGACAAACAACCAGCTCTTC
AGGTTCCCGTGTCAGTGGCTATGATGACACCTCAAGTTATCACTCCCCAGCAAATGCAGCAGATCCTCCA
GCAACAAGTGCTGAGCCCTCAGCAGCTCCAGGTTCTCCTCCAGCAGCAGCAGGCCCTCATGCTTCAACAG
CAGCAGCTTCAAGAGTTTTATAAAAAACAACAGGAACAGTTGCAGCTTCAACTTTTACAACAACAACATG
CTGGAAAACAGCCTAAAGAGCAACAGCAGGTGGCTACCCAGCAGTTGGCTTTTCAGCAGCAGCTTTTACA
GATGCAGCAGTTACAGCAGCAGCACCTCCTGTCTTTGCAGCGCCAAGGCCTTCTGACAATTCAGCCCGGG
CAGCCTGCCCTTCCCCTTCAACCTCTTGCTCAAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAG
AAGTGACAAGTGCTCATACTGCAGAAGAAACCACAGGCAACAATCACAGCAGTTTGGATCTGACCACGAC
ATGTGTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATGAACCCACATGCCTCTACCAATGGACAG
CTCTCAGTCCACACTCCCAAAAGGGAAAGTTTGTCCCATGAGGAGCACCCCCATAGCCATCCTCTCTATG
GACATGGTGTATGCAAGTGGCCAGGCTGTGAAGCAGTGTGCGAAGATTTCCAATCATTTCTAAAACATCT
CAACAGTGAGCATGCGCTGGACGATAGAAGTACAGCCCAATGTAGAGTACAAATGCAGGTTGTACAGCAG
TTAGAGCTACAGCTTGCAAAAGACAAAGAACGCCTGCAAGCCATGATGACCCACCTGCATGTGAAGTCTA
CAGAACCCAAAGCCGCCCCTCAGCCCTTGAATCTGGTATCAAGTGTCACTCTCTCCAAGTCCGCATCGGA
GGCTTCTCCACAGAGCTTACCTCATACTCCAACGACCCCAACCGCCCCCCTGACTCCCGTCACCCAAGGC
CCCTCTGTCATCACAACCACCAGCATGCACACGGTGGGACCCATCCGCAGGCGGTACTCAGACAAATACA
ACGTGCCCATTTCGTCAGCAGATATTGCGCAGAACCAAGAATTTTATAAGAACGCAGAAGTTAGACCACC
ATTTACATATGCATCTTTAATTAGGCAGGCCATTCTCGAATCTCCAGAAAAGCAGCTAACACTAAATGAG
ATCTATAACTGGTTCACACGAATGTTTGCTTACTTCCGACGCAACGCGGCCACGTGGAAGAATGCAGTGC
GTCATAATCTTAGTCTTCACAAGTGTTTTGTGCGAGTAGAAAACGTTAAAGGGGCAGTATGGACAGTGGA
TGAAGTAGAATTCCAAAAACGAAGGCCACAAAAGATCAGTGGTAACCCTTCCCTTATTAAAAACATGCAG
AGCAGCCACGCCTACTGCACACCTCTCAATGCAGCTTTACAGGCTTCAATGGCTGAGAATAGTATACCTC
TATACACTACCGCTTCCATGGGAAATCCCACTCTGGGCAACTTAGCCAGCGCAATACGGGAAGAGCTGAA
CGGGGCAATGGAGCATACCAACAGCAACGAGAGTGACAGCAGTCCAGGCAGATCTCCTATGCAAGCCGTG
CATCCTGTACACGTCAAAGAAGAGCCCCTCGATCCAGAGGAAGCTGAAGGGCCCCTGTCCTTAGTGACAA
CAGCCAACCACAGTCCAGATTTTGACCATGACAGAGATTACGAAGATGAACCAGTAAACGAGGACATGGA
GTGA

Translation (677 aa):
MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQALQVARQLLL
QQQQQQQVSGLKSPKRNDKQPALQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQ
QQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQQVATQQLAFQQQLLQMQQLQQQHLLSLQRQGLLTIQPG
QPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTGNNHSSLDLTTTCVSSSAPSKTSLIMNPHASTNGQ
LSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCEDFQSFLKHLNSEHALDDRSTAQCRVQMQVVQQ
LELQLAKDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPVTQG
PSVITTTSMHTVGPIRRRYSDKYNVPISSADIAQNQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNE
IYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEFQKRRPQKISGNPSLIKNMQ
SSHAYCTPLNAALQASMAENSIPLYTTASMGNPTLGNLASAIREELNGAMEHTNSNESDSSPGRSPMQAV
HPVHVKEEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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