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Report for CCDS29102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29102.1 Public Mus musculus 18 Rprd1a 23 108 98 CCDS HistoryNCBI Gene:225283Re-query CCDS DB by CCDS ID:29102.1Re-query CCDS DB by GeneID:225283See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046206.4 ENSMUSP00000043618.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046206.4Link to Ensembl Protein Viewer:ENSMUSP00000043618.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000046206Re-query CCDS DB by Protein ID:ENSMUSP00000043618
Original member Current member NCBI NM_001360807.1 NP_001347736.1 Accepted alive Link to Nucleotide Sequence:NM_001360807.1Link to Protein Sequence:NP_001347736.1Re-query CCDS DB by Nucleotide ID:NM_001360807Re-query CCDS DB by Protein ID:NP_001347736Link to BLAST:NP_001347736.1
Original member Current member NCBI NM_144861.2 NP_659110.1 Accepted alive Link to Nucleotide Sequence:NM_144861.2Link to Protein Sequence:NP_659110.1Re-query CCDS DB by Nucleotide ID:NM_144861Re-query CCDS DB by Protein ID:NP_659110Link to BLAST:NP_659110.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347736.1 312 Q8VDS4 312 100% 0 0
NP_659110.1 312 Q8VDS4 312 100% 0 0

Chromosomal Locations for CCDS 29102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 24488182 24488331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24506834 24507009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24507105 24507231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24507994 24508091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24508170 24508276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24509793 24509922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 24529916 24530066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGTCCGCCTTCTCTGAGGCGGCGCTGGAGAAGAAGCTGTCCGAGTTGAGCAACTCGCAGCAGAGCGTGC
AGACCCTGTCCCTGTGGCTCATCCACCATCGCAAACACTCGCGGCCCATCGTCACGGTGTGGGAACGGGA
GCTACGCAAAGCCAAACCCAACAGGAAGCTTACTTTTCTCTACTTGGCCAATGATGTCATTCAAAACAGC
AAAAGGAAGGGGCCAGAGTTCACAAAAGATTTTGCACCAGTAATAGTGGAGGCATTCAAGCATGTTTCAA
GTGAAACTGATGAAAGCTGTAAGAAGCACCTTGGAAGAGTGTTATCTATTTGGGAAGAACGATCTGTTTA
TGAAAATGATGTATTAGAGCAACTCAAGCACGCGCTGTATGGAGATAAGAAGGCAAGGAAGAGGACTTAT
GAGCAAATAAAGGTGGATGAGAATGAAAATTGTTCCTCTCTAGGGTCCCCAAGTGAGCCACCACAGACTC
TCGACCTTGTTAGAGCATTACAAGATTTAGAAAATGCAGCCTCAGGTGACGCAGCAGTCCATCAAAGGAT
AGCGTCTTTGCCTGTCGAAGTTCAAGAAGTGTCCCTGCTTGAGAAGATAACAGACAAAGAATCTGGAGAG
AGGCTTTCTAAAATGGTAGAAGATGCTTGTATGCTGCTGGCAGATTATAATGGCAGACTGGCGGCAGAAA
TAGATGATAGAAAGCAACTCACCCGAATGTTAGCAGATTTTCTTCGTTGTCAAAAGGAAGCCCTTGCAGA
GAAAGAACATAAATTGGAAGAATACAAGCGCAAGTTAGCCCGAGTTTCCCTGGTACGCAAAGAACTAAGA
GCCCGGATCCAGAGCCTGCCAGATTTATCTCGTTTGCCCAATGTCACTGGCAGTCACATGCACCTGCCCT
TTGCGGGGGACATCTACAGTGAAGACTGA

Translation (312 aa):
MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNS
KRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKHALYGDKKARKRTY
EQIKVDENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKITDKESGE
RLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELR
ARIQSLPDLSRLPNVTGSHMHLPFAGDIYSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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