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Report for CCDS29012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29012.1 Public Mus musculus 17 Cript 23 108 98 CCDS HistoryNCBI Gene:56724Re-query CCDS DB by CCDS ID:29012.1Re-query CCDS DB by GeneID:56724See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024959.9 ENSMUSP00000024959.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024959.9Link to Ensembl Protein Viewer:ENSMUSP00000024959.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024959Re-query CCDS DB by Protein ID:ENSMUSP00000024959
Original member Current member NCBI NM_019936.3 NP_064320.1 Accepted alive Link to Nucleotide Sequence:NM_019936.3Link to Protein Sequence:NP_064320.1Re-query CCDS DB by Nucleotide ID:NM_019936Re-query CCDS DB by Protein ID:NP_064320Link to BLAST:NP_064320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064320.1 101 O70333 101 100% 0 0

Chromosomal Locations for CCDS 29012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87025660 87025675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87027699 87027764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87031008 87031062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87034256 87034359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87034978 87035042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGTGTGTGAAAAGTGTGAAAAGAAACTCGGCAGAGTTATCACTCCAGACACATGGAAAGATGGTGCCC
GGAACACCACAGAGAGTGGTGGGAGGAAGCTGAACGAAAATAAAGCTTTGACTTCGAAAAAAGCAAGGTT
TGATCCATATGGAAAAAATAAGTTCTCCACTTGCAGAATTTGTAAAAGTTCTGTACACCAGCCAGGTTCT
CATTACTGTCAAGGCTGCGCCTACAAAAAAGGCATCTGTGCGATGTGTGGCAAAAAGGTTTTGGATACCA
AAAACTACAAGCAGACTTCCGTGTAG

Translation (101 aa):
MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRICKSSVHQPGS
HYCQGCAYKKGICAMCGKKVLDTKNYKQTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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