NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28889.1 Public Mus musculus 17 Stap2 23 108 98 CCDS HistoryNCBI Gene:106766Re-query CCDS DB by CCDS ID:28889.1Re-query CCDS DB by GeneID:106766See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043785.7 ENSMUSP00000038130.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043785.7Link to Ensembl Protein Viewer:ENSMUSP00000038130.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043785Re-query CCDS DB by Protein ID:ENSMUSP00000038130
Original member Current member NCBI NM_145934.3 NP_666046.1 Accepted alive Link to Nucleotide Sequence:NM_145934.3Link to Protein Sequence:NP_666046.1Re-query CCDS DB by Nucleotide ID:NM_145934Re-query CCDS DB by Protein ID:NP_666046Link to BLAST:NP_666046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666046.1 411 Q8R0L1-1 411 100% 0 0

Chromosomal Locations for CCDS 28889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55997297 55997361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55997460 55997534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55997605 55997697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55997778 55997951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55999743 55999808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55999913 56000015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56000087 56000156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56000480 56000614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56000901 56001001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56002012 56002068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56002853 56002975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56003130 56003201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56005430 56005531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCCACAGCCCTGAGTCCACCCCGGGGTCCCAAGCTCAAAGGTGCTCCACCTTCACACTACTACGAGA
GCTTCCTAGAGAAAAAGGGACCCTGTGACCAGGATTACAGGAAGTTCTGGGCAGGCCTCCAGGGTTTAGC
CATCTGTTTCTACAATAGCAATCGGGACTTGCAGCCCCTGGAAAAGCTGGACCTGAGGCTGTTTTCAAAG
CTCAGAGATGAGGCTCTGCTGGGAAGCTCACGGGACACTGCCTATCACTTCAGCCTGGTTCTCCGGGACC
AGGAGGTGAAATTCAAGGTGGAGAGCCTGGAGTCTTGTGAGATGTGGAAAGGATTTATCTTGACTGTGGT
AGAGCTCCGTGTCCCATCTAACCTGACCCTGCTGCCCGGACACCTGTACATGATGGCCGAGGTCCTGACC
AAAGAGGAGGTACGGAGGGCAGCCGAGGTGCCCTGGTGCTTTCTTCAGGTGAGCAGGCTCGAGGCGCAGC
TGCTCCTGGAGCGCTACCCAGAGTGCGGGAACCTGCTTCTGCGGCCTGGCGGGGATGGCAAGGACAGTGT
GTCTGTCACCACCCGGCAGATTCTCAATGGGTCTCCCGTGGTCAAACACTACAAAGTGAAGCGGGCAGGT
TCTAAGTATGTGATCGACGTGGAAGACCCGTTTTCCTGCCCCTCGCTGGAAGCTGTAGTCAACTATTTTG
TGACGCACACCAAGAGGGCGCTGGTCCCCTTCTTGTTGGATGAGGACTATGAGAAGGTTCTAGGCTTCGT
GGACTCGGATCGGGAGAATGGCGAGAGTGCATGGGCTGTGCCCTCCTTCCGAGCCTCAGGCCCTGCCCTC
CCTGCTAATGTCCTGAAGCCACTCCCACCTGTACCTGTGTCTGTGTCCAGCCAGGAAGACAAGTTGCCTC
AACTACCTCCCCTGCCTCAGTTACCAGACACGGATGAGAACTACGTGACTCCCATTGAAGACTCCCCAGC
AGCCGAATACATGAATCAGGATGTGTCTCTCTCCAGTCAGGCAGTCCCTCTGAAGCCCAAGAAGCCGGCA
AGGCTCCCAGCAAAACCCCCAAAGCCATCAGTTGTGCCTAAGCCAGATCTCAAAGCCATTACCAGCGTTT
GGACCAGGAAGCTAGGTGGAAGCTCGTCCCAGGCTTCCTCCCTTGTGACAAGACTTGGGGATATCACCGC
TGAGCTGGAAGAGAAACTACAGAAGAGGAGGGCACTGGAACACTGA

Translation (411 aa):
MATALSPPRGPKLKGAPPSHYYESFLEKKGPCDQDYRKFWAGLQGLAICFYNSNRDLQPLEKLDLRLFSK
LRDEALLGSSRDTAYHFSLVLRDQEVKFKVESLESCEMWKGFILTVVELRVPSNLTLLPGHLYMMAEVLT
KEEVRRAAEVPWCFLQVSRLEAQLLLERYPECGNLLLRPGGDGKDSVSVTTRQILNGSPVVKHYKVKRAG
SKYVIDVEDPFSCPSLEAVVNYFVTHTKRALVPFLLDEDYEKVLGFVDSDRENGESAWAVPSFRASGPAL
PANVLKPLPPVPVSVSSQEDKLPQLPPLPQLPDTDENYVTPIEDSPAAEYMNQDVSLSSQAVPLKPKKPA
RLPAKPPKPSVVPKPDLKAITSVWTRKLGGSSSQASSLVTRLGDITAELEEKLQKRRALEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH