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Report for CCDS28864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28864.1 Public Mus musculus 17 Trem6l 23 108 98 CCDS HistoryNCBI Gene:320148Re-query CCDS DB by CCDS ID:28864.1Re-query CCDS DB by GeneID:320148See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049614.12 ENSMUSP00000054890.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049614.12Link to Ensembl Protein Viewer:ENSMUSP00000054890.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049614Re-query CCDS DB by Protein ID:ENSMUSP00000054890
Original member NCBI NM_177083.4 NP_796057.1 Updated not alive Link to Nucleotide Sequence:NM_177083.4Link to Protein Sequence:NP_796057.1Re-query CCDS DB by Nucleotide ID:NM_177083Re-query CCDS DB by Protein ID:NP_796057
Current member NCBI NM_177083.5 NP_796057.1 Accepted alive Link to Nucleotide Sequence:NM_177083.5Link to Protein Sequence:NP_796057.1Re-query CCDS DB by Nucleotide ID:NM_177083Re-query CCDS DB by Protein ID:NP_796057Link to BLAST:NP_796057.1

Chromosomal Locations for CCDS 28864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48316428 48316485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48316731 48317042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48319151 48319214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48320978 48321105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48322411 48322469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48323937 48324185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGCCTGGGAGCCCACATACCTGCTCTCCCCAGTGCTGCTGCTGCTCCTGGCCTCAGGCTCCTGGACAC
AGAAACCAGAGTTACTTCGAGCACAGGAGGGTGAGACTGTTTCTTTGACATGCTGGTATGATTCGCTCTA
CCACTCCGATGAGAAGATCTGGTGTAAGCAAATAGACAACTTGTGTTACCTCTTCGTCAGCAAAAGTGCC
GAGAAGCCAAGATTCCTCATCCAGCAGTCTTCTCGCTTCAACTTCTTCACTGTCACCATGACTAAGCTCA
AGATGAGTGACTCGGGCATCTATCACTGTGGGATCGCTGTAAATACCAGGATAATTTATCTCAGAAGTAT
TCACCTGGTGGTGTCAAAAGCTTCATCCACAACCACCTGGAGGACAACAACCCTGGCCTCTACCCACAGC
CCCGTCACTAACAGAAGCTTTCCAGATAGCCCGATGTGGAAGGCCATCGTTGCTGGGGTGGTCGTGGCTG
TTCTGCTACTGCTCACATTCGTCATCCTTGTGATCCTGTACCTGAGGAAAGCTCGAAGAAAGGCCCTGAA
CGTTCAGAACCAATGTCACCCTATCTATGAAGACTTTTCAGACCAGAAGGAGGAGACCACTAGCTTCAAT
CAGCAGACCCACTCCAGTGAGGACACTGGGACCATCTGCTATGCCTCTCTCATCCACCTAAACCGTGTAA
ACCCTCAGGACTCCATCTACAGCAACACCCAGCCCTACCCGAAGCCCTCTCCTGACCCACTTCTGACTGT
GGAATATGCCAGCATCTCTAGAAACAGACTCGGCTCTTCCAAGCCAGATTACCCAAGAGGTGAAGACCAG
CAACTGAGGGCTGAGCTCCCAGGGCAGTGA

Translation (289 aa):
MAWEPTYLLSPVLLLLLASGSWTQKPELLRAQEGETVSLTCWYDSLYHSDEKIWCKQIDNLCYLFVSKSA
EKPRFLIQQSSRFNFFTVTMTKLKMSDSGIYHCGIAVNTRIIYLRSIHLVVSKASSTTTWRTTTLASTHS
PVTNRSFPDSPMWKAIVAGVVVAVLLLLTFVILVILYLRKARRKALNVQNQCHPIYEDFSDQKEETTSFN
QQTHSSEDTGTICYASLIHLNRVNPQDSIYSNTQPYPKPSPDPLLTVEYASISRNRLGSSKPDYPRGEDQ
QLRAELPGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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