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Report for CCDS28689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28689.1 Public Mus musculus 17 Aif1 23 108 98 CCDS HistoryNCBI Gene:11629Re-query CCDS DB by CCDS ID:28689.1Re-query CCDS DB by GeneID:11629See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025257.11 ENSMUSP00000025257.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025257.11Link to Ensembl Protein Viewer:ENSMUSP00000025257.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025257Re-query CCDS DB by Protein ID:ENSMUSP00000025257
Original member Current member EBI ENSMUST00000173324.7 ENSMUSP00000133709.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173324.7Link to Ensembl Protein Viewer:ENSMUSP00000133709.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173324Re-query CCDS DB by Protein ID:ENSMUSP00000133709
Original member Current member EBI ENSMUST00000172693.7 ENSMUSP00000134214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172693.7Link to Ensembl Protein Viewer:ENSMUSP00000134214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172693Re-query CCDS DB by Protein ID:ENSMUSP00000134214
Original member NCBI NM_001361501.1 NP_001348430.1 Updated not alive Link to Nucleotide Sequence:NM_001361501.1Link to Protein Sequence:NP_001348430.1Re-query CCDS DB by Nucleotide ID:NM_001361501Re-query CCDS DB by Protein ID:NP_001348430
Current member NCBI NM_001361501.2 NP_001348430.1 Accepted alive Link to Nucleotide Sequence:NM_001361501.2Link to Protein Sequence:NP_001348430.1Re-query CCDS DB by Nucleotide ID:NM_001361501Re-query CCDS DB by Protein ID:NP_001348430Link to BLAST:NP_001348430.1
Original member NCBI NM_019467.3 NP_062340.1 Updated not alive Link to Nucleotide Sequence:NM_019467.3Link to Protein Sequence:NP_062340.1Re-query CCDS DB by Nucleotide ID:NM_019467Re-query CCDS DB by Protein ID:NP_062340
Current member NCBI NM_019467.4 NP_062340.1 Accepted alive Link to Nucleotide Sequence:NM_019467.4Link to Protein Sequence:NP_062340.1Re-query CCDS DB by Nucleotide ID:NM_019467Re-query CCDS DB by Protein ID:NP_062340Link to BLAST:NP_062340.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348430.1 147 O70200 147 100% 0 0
NP_062340.1 147 O70200 147 100% 0 0

Chromosomal Locations for CCDS 28689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35171109 35171193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35171414 35171576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35171763 35171804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35172128 35172194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35172285 35172346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35172515 35172539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGAGCCAAAGCAGGGATTTGCAGGGAGGAAAAGCTTTTGGACTGCTGAAGGCCCAGCAGGAAGAGAGGC
TGGAGGGGATCAACAAGCAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACT
TGAAGCCTTCAAGGTGAAGTACATGGAGTTTGATCTGAATGGAAATGGAGATATCGATATTATGTCCTTG
AAGCGAATGCTGGAGAAACTTGGGGTTCCCAAGACCCACCTAGAGCTGAAGAGATTAATTAGAGAGGTGT
CCAGTGGCTCCGAGGAGACGTTCAGCTACTCTGACTTTCTCAGAATGATGCTGGGCAAGAGATCTGCCAT
CTTGAGAATGATTCTGATGTATGAGGAGAAAAACAAAGAACACAAGAGGCCAACTGGTCCCCCAGCCAAG
AAAGCTATCTCCGAGCTGCCCTGA

Translation (147 aa):
MSQSRDLQGGKAFGLLKAQQEERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSL
KRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGKRSAILRMILMYEEKNKEHKRPTGPPAK
KAISELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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