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Report for CCDS27913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27913.1 Public Mus musculus 16 Dnase1 23 108 98 CCDS HistoryNCBI Gene:13419Re-query CCDS DB by CCDS ID:27913.1Re-query CCDS DB by GeneID:13419See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006136.10 ENSMUSP00000006136.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006136.10Link to Ensembl Protein Viewer:ENSMUSP00000006136.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006136Re-query CCDS DB by Protein ID:ENSMUSP00000006136
Original member Current member EBI ENSMUST00000120009.7 ENSMUSP00000113119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120009.7Link to Ensembl Protein Viewer:ENSMUSP00000113119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120009Re-query CCDS DB by Protein ID:ENSMUSP00000113119
Original member NCBI NM_001357143.1 NP_001344072.1 Updated not alive Link to Nucleotide Sequence:NM_001357143.1Link to Protein Sequence:NP_001344072.1Re-query CCDS DB by Nucleotide ID:NM_001357143Re-query CCDS DB by Protein ID:NP_001344072
Current member NCBI NM_001357143.2 NP_001344072.1 Accepted alive Link to Nucleotide Sequence:NM_001357143.2Link to Protein Sequence:NP_001344072.1Re-query CCDS DB by Nucleotide ID:NM_001357143Re-query CCDS DB by Protein ID:NP_001344072Link to BLAST:NP_001344072.1
Original member NCBI NM_010061.5 NP_034191.3 Updated not alive Link to Nucleotide Sequence:NM_010061.5Link to Protein Sequence:NP_034191.3Re-query CCDS DB by Nucleotide ID:NM_010061Re-query CCDS DB by Protein ID:NP_034191
Current member NCBI NM_010061.6 NP_034191.3 Accepted alive Link to Nucleotide Sequence:NM_010061.6Link to Protein Sequence:NP_034191.3Re-query CCDS DB by Nucleotide ID:NM_010061Re-query CCDS DB by Protein ID:NP_034191Link to BLAST:NP_034191.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344072.1 284 P49183 284 100% 0 0
NP_034191.3 284 P49183 284 100% 0 0

Chromosomal Locations for CCDS 27913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4037551 4037697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4037954 4038042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4038187 4038270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4038516 4038631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4038943 4039055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4039130 4039284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4039545 4039641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4039812 4039865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGCGGTACACAGGGCTAATGGGAACACTGCTCACCTTGGTCAACCTGCTGCAGCTGGCTGGGACTCTGA
GAATTGCAGCCTTCAACATTCGGACTTTTGGGGAGACTAAGATGTCCAATGCTACCCTCTCTGTATACTT
TGTGAAAATCCTGAGTCGCTATGACATCGCTGTTATCCAAGAGGTCAGAGACTCCCACCTGGTTGCTGTT
GGGAAGCTCCTGGATGAACTCAATCGGGACAAACCTGACACCTACCGCTATGTAGTCAGTGAGCCGCTGG
GCCGCAAAAGCTACAAGGAACAGTACCTTTTTGTGTACAGGCCTGACCAGGTGTCTATTCTGGACAGCTA
TCAATATGATGATGGCTGTGAACCCTGTGGAAATGACACCTTCAGCAGAGAGCCAGCCATTGTTAAGTTC
TTTTCCCCATACACTGAGGTCCAAGAATTTGCGATCGTGCCCTTGCATGCAGCCCCAACAGAAGCTGTGA
GTGAGATCGACGCCCTCTACGATGTTTACCTAGATGTCTGGCAAAAGTGGGGCCTGGAGGACATCATGTT
CATGGGAGACTTCAATGCTGGCTGCAGCTACGTCACTTCCTCCCAGTGGTCCTCCATTCGCCTTCGGACA
AGCCCCATCTTCCAGTGGCTGATCCCTGACAGTGCGGACACCACAGTCACATCAACACACTGTGCTTATG
ACAGGATTGTGGTTGCTGGAGCTCTGCTCCAGGCTGCTGTTGTTCCCAACTCGGCTGTTCCTTTTGATTT
CCAAGCAGAATACGGACTTTCCAACCAGCTGGCTGAAGCCATCAGTGACCATTACCCAGTGGAGGTGACA
CTCAGAAAAATCTGA

Translation (284 aa):
MRYTGLMGTLLTLVNLLQLAGTLRIAAFNIRTFGETKMSNATLSVYFVKILSRYDIAVIQEVRDSHLVAV
GKLLDELNRDKPDTYRYVVSEPLGRKSYKEQYLFVYRPDQVSILDSYQYDDGCEPCGNDTFSREPAIVKF
FSPYTEVQEFAIVPLHAAPTEAVSEIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRT
SPIFQWLIPDSADTTVTSTHCAYDRIVVAGALLQAAVVPNSAVPFDFQAEYGLSNQLAEAISDHYPVEVT
LRKI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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