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Report for CCDS27886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27886.1 Public Mus musculus 15 Tarbp2 23 108 98 CCDS HistoryNCBI Gene:21357Re-query CCDS DB by CCDS ID:27886.1Re-query CCDS DB by GeneID:21357See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023813.8 ENSMUSP00000023813.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023813.8Link to Ensembl Protein Viewer:ENSMUSP00000023813.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000023813Re-query CCDS DB by Protein ID:ENSMUSP00000023813
Original member NCBI NM_009319.3 NP_033345.2 Updated not alive Link to Nucleotide Sequence:NM_009319.3Link to Protein Sequence:NP_033345.2Re-query CCDS DB by Nucleotide ID:NM_009319Re-query CCDS DB by Protein ID:NP_033345
Current member NCBI NM_009319.4 NP_033345.2 Accepted alive Link to Nucleotide Sequence:NM_009319.4Link to Protein Sequence:NP_033345.2Re-query CCDS DB by Nucleotide ID:NM_009319Re-query CCDS DB by Protein ID:NP_033345Link to BLAST:NP_033345.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033345.2 365 P97473 365 100% 0 0

Chromosomal Locations for CCDS 27886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102518550 102518602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102519122 102519291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102520475 102520577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102521121 102521213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102521724 102521796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102521981 102522098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102522424 102522551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102522849 102523050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102523185 102523342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGAGTGAAGAGGATCAGGGCTCCGGCACTACTACAGGCTGCGGGCTGCCCAGCATAGAGCAAATGCTGG
CCGCCAACCCGGGCAAGACCCCGATCAGCCTTCTTCAGGAGTATGGGACCAGAATAGGAAAGACGCCCGT
GTACGACCTTCTCAAAGCCGAGGGCCAAGCCCATCAACCTAATTTCACCTTTCGGGTCACCGTTGGCGAC
ACCAGCTGCACTGGTCAGGGCCCCAGCAAGAAGGCAGCCAAGCACAAGGCAGCTGAGGTGGCCCTCAAAC
ACCTCAAAGGGGGGAGCATGCTGGAACCAGCCCTGGAGGACAGCAGTTCTTTTTCTCTCCTAGACTCTTC
ACCGCCTGAGGACACTCCTGTCGTTGCTGCAGAAGCTGCTGCCCCTGTTCCATCTGCTGTACTAACCAGG
AGCCCTCCCATGGAGATGCAGCCCCCTGTCTCTCCTCAGCAGTCTGAGTGCAACCCCGTCGGTGCTCTGC
AGGAGCTGGTGGTGCAAAAAGGCTGGCGTTTGCCAGAGTACATGGTGACCCAAGAGTCTGGGCCTGCTCA
CCGCAAAGAGTTCACCATGACTTGCCGGGTGGAGCGTTTCATTGAGATTGGCAGTGGCACTTCCAAAAAG
CTGGCAAAGCGTAACGCAGCAGCTAAGATGCTCCTTCGAGTGCACACTGTACCTCTGGATGCCCGGGATG
GCAATGAGGCAGAGCCTGATGACGATCATTTTTCCATTGGCGTGAGCTCCCGCCTGGATGGACTGAGGAA
TCGTGGGCCAGGCTGCACCTGGGATTCCTTGCGGAATTCTGTGGGAGAAAAGATCCTATCCCTTCGCAGT
TGCTCCGTGGGCTCTCTAGGGGCTCTGGGCTCTGCCTGCTGCAGTGTCCTCAGTGAGCTCTCTGAGGAGC
AGGCTTTCCATGTCAGCTATCTGGATATTGAGGAACTGAGCCTGAGTGGGCTCTGCCAGTGCCTAGTGGA
ACTGTCCACCCAGCCAGCCACTGTGTGTTATGGTTCTGCAACCACCAGGGAGGCAGCCCGAGGTGATGCT
GCTCACCGCGCCCTACAGTACCTCAGGATCATGGCGGGTAGCAAGTAG

Translation (365 aa):
MSEEDQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGD
TSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSSPPEDTPVVAAEAAAPVPSAVLTR
SPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQESGPAHRKEFTMTCRVERFIEIGSGTSKK
LAKRNAAAKMLLRVHTVPLDARDGNEAEPDDDHFSIGVSSRLDGLRNRGPGCTWDSLRNSVGEKILSLRS
CSVGSLGALGSACCSVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDA
AHRALQYLRIMAGSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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