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Report for CCDS27448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27448.1 Public Mus musculus 15 Oxr1 23 108 98 CCDS HistoryNCBI Gene:170719Re-query CCDS DB by CCDS ID:27448.1Re-query CCDS DB by GeneID:170719See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022918.14 ENSMUSP00000022918.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022918.14Link to Ensembl Protein Viewer:ENSMUSP00000022918.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022918Re-query CCDS DB by Protein ID:ENSMUSP00000022918
Original member Current member NCBI NM_130885.2 NP_570955.1 Accepted alive Link to Nucleotide Sequence:NM_130885.2Link to Protein Sequence:NP_570955.1Re-query CCDS DB by Nucleotide ID:NM_130885Re-query CCDS DB by Protein ID:NP_570955Link to BLAST:NP_570955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570955.1 778 Q4KMM3-2 778 100% 0 0

Chromosomal Locations for CCDS 27448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 41797518 41797556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41800471 41800578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41801582 41801695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41813574 41813726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41817082 41817266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41819839 41820578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41823327 41823495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41825890 41826052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41848670 41848750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41850459 41850584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41851375 41851527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41853322 41853417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41854921 41854994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 41859158 41859293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGTCTTTTCAGAAGCCTAAAGGAACCATTGAATATACTGTTGAATCAAGGGATTCTTTGAATAGCATAG
CCCTGAAATTTGATACCACACCCAATGAACTTGTTCAGTTAAATAAGTTATTCTCTCGAGCAGTCGTGAC
TGGACAGGTTTTATACGTTCCTGATCCTGAATATGTCTCTAGTGTTGAGAGTTCCCCATCCCTCAGCCCT
GTAAGCCCTCTGTCGCCAACGTCATCCGAGGCTGAATTTGATAAAACCACGACTCCAGATGTAGCCCATC
CAAAAGAAGCACCCCCGGCATCGACTGTGAGCGGTATTCGGCCTGCGAGAGTTGTGTCTTCAACTTCTGA
AGAAGAAGAAGCCTTTACTGAGAAATTTCTTAAAATTAATTGCAAATATATCACCATTGGCAAGGGCACA
GTCAGTGGCGTCCTGCTAGTCACACCAAATAACATAATGTTTGATCCACACAAGACAGACCCCTTGGTTC
AAGAGAACGGTTGTGAGGAATACGGCATCATGTGTCCGATGGAAGAGGTGATGTCAGCTGCCATGTACAA
AGAGATTTTGGATAGCAAAATAAAGGAATCACTGCCCATAGAACTAGATCAGTTGTCAGGAAGGGGGTCC
TGCCATTCAAAGAAAGCGACAGGAGTCTCTGCTGAGGACGCAGACCCGAGAGCGCGTGACCAGGGTAACG
ACAGTGCCAGCACTGCTCCCAGGAGCACCGAGGAGTCTCTCTCGGAAGACGCTTTCACAGAGTCAGAACT
CTCTCCTATCCGCGAGGAGCTGCTCTCCTCGGAGCCGAGACAGGAGAAGTCATCTGATGCCTCGTCAGAA
TCTGTGCAGACTGTCAGTCAGATGGAAGTCCAGTCCTTGACAGCCACGTCAGAGGCTGCTAACGTTCCTG
ACCGCACTAGCTCTAACCCTGGGGCTCTATCTCATGAAACTGGCTTAAGTGGTCTGGAAACAGCCACTAA
AGGAGGAGATAAAGCTACAGAAAGCCTTCAAGAAGTCTCAGGCCCAAAGGAACAAAGCACAGAAGTAAAA
GGTCAGGATAACCAGGATTCTTCCCACCAGGAAAGTTCACTGCAGCAAGAGGCAGGTGAAGACAGTGTAT
CTTCTGGAGAAACAGTAGAACTGAAAGAAAAACCAGCTGTTCTTAAGGATCAACAAGGGCAGGAGCTAAA
ACGGGACTCAGAGACAGAAGTAGAGGAGCTGCGCAAACTCTGGAAAACTCACTCTATGCAGCAAGCCAAG
CAGCAAAGGGACACGATTCAGCAGGTGTCACAGAGAGAAAGTAAACACAGCAGCGCAGCAGCAGACGCAC
ATGGAGAGGGCTCCTCGCTGTTAAAGGAAAAGCGAAGGCATCGATTACATAAGTTCCTATGTCTCAGAGT
CGGAAAACCAATGAGGAAGACCTTTGTATCGCAAGCAAGTGCTACGATGCAACAGTATGCACAAAGAGAT
AAAAAACACGAATATTGGTTTGCAGTGCCACAAGAAAGGACAGACCACTTGTATGCCTTCTTCATTCAGT
GGAGTCCAGAAATCTATGCAGAAGATTCTGGTGAATACACCAGAGAGCCTGGATTCATAGTAGTCAAAAA
GATGGACGAGTCTGAAGCGAATGAAGCCCCTGCTGGTGAAGCAGCAGCCAGGGAGTGGGAGGTAGTGTCG
GTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTGCAGACGGCTCC
AGATTACTACAAGGGAAGACATCAACTCAAAGCAGGTTGCTCCAGCAAAAGCAGACCTGGAGCCTGAATC
TTTCCGACCAAACCTAAGCGACCCCAGTGAACTCTTACTGCCTGATCAGATTGAAAAGCTTACTAAGCAC
CTTCCACCAAGAACCATTGGCTATCCATGGACGCTTGTGTACGGTACTGGGAAGCATGGTACAAGTTTGA
AGACCCTTTATCGAACAATGACAGGTTTAGACACTCCGGTGCTGATGGTGATTAAAGACAGTGATGGACA
GGTTTTTGGTGCATTAGCATCAGAGCCATTTAAAGTAAGTGATGGCTTTTACGGTACTGGAGAAACATTT
GTTTTCACATTCTGCCCAGAATTTGAGGTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAAAGGAG
ACATGGATTCATTAGCATTTGGTGGTGGAGGAGGGGAATTTGCTCTTTGGCTTGATGGAGATCTCTACCA
TGGAAGAAGCCATTCCTGTAAAACGTTTGGGAATCATACACTTTCTAAGAAGGAAGATTTCTTTATCCAA
GACATTGAAATCTGGGCTTTTGAATAA

Translation (778 aa):
MSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLYVPDPEYVSSVESSPSLSP
VSPLSPTSSEAEFDKTTTPDVAHPKEAPPASTVSGIRPARVVSSTSEEEEAFTEKFLKINCKYITIGKGT
VSGVLLVTPNNIMFDPHKTDPLVQENGCEEYGIMCPMEEVMSAAMYKEILDSKIKESLPIELDQLSGRGS
CHSKKATGVSAEDADPRARDQGNDSASTAPRSTEESLSEDAFTESELSPIREELLSSEPRQEKSSDASSE
SVQTVSQMEVQSLTATSEAANVPDRTSSNPGALSHETGLSGLETATKGGDKATESLQEVSGPKEQSTEVK
GQDNQDSSHQESSLQQEAGEDSVSSGETVELKEKPAVLKDQQGQELKRDSETEVEELRKLWKTHSMQQAK
QQRDTIQQVSQRESKHSSAAADAHGEGSSLLKEKRRHRLHKFLCLRVGKPMRKTFVSQASATMQQYAQRD
KKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDSGEYTREPGFIVVKKMDESEANEAPAGEAAAREWEVVS
VAEYHRRIDALNTEELRTLCRRLQITTREDINSKQVAPAKADLEPESFRPNLSDPSELLLPDQIEKLTKH
LPPRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPFKVSDGFYGTGETF
VFTFCPEFEVFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNHTLSKKEDFFIQ
DIEIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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