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Report for CCDS27385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27385.1 Public Mus musculus 15 Tars1 23 108 98 CCDS HistoryNCBI Gene:110960Re-query CCDS DB by CCDS ID:27385.1Re-query CCDS DB by GeneID:110960See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022849.6 ENSMUSP00000022849.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022849.6Link to Ensembl Protein Viewer:ENSMUSP00000022849.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022849Re-query CCDS DB by Protein ID:ENSMUSP00000022849
Original member Current member NCBI NM_033074.3 NP_149065.2 Accepted alive Link to Nucleotide Sequence:NM_033074.3Link to Protein Sequence:NP_149065.2Re-query CCDS DB by Nucleotide ID:NM_033074Re-query CCDS DB by Protein ID:NP_149065Link to BLAST:NP_149065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149065.2 722 Q9D0R2 722 100% 0 0

Chromosomal Locations for CCDS 27385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 11384011 11384159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11385084 11385198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11387052 11387124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11387263 11387367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11387472 11387572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11387701 11387778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11388081 11388218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11388298 11388460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11389576 11389742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11390312 11390410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11391061 11391207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11391814 11391892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11391970 11392034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11392232 11392349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11392787 11392908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11393157 11393280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11394224 11394414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11397181 11397261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11399486 11399539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGTCGCAGGAGAAGGCTAGCAGCCCTTCGGGGAAGATGGACGGCGAGAAGCCGGTGGATGCCAGCGAGG
AGAAGCGGAAAGAAGGAGGCAAGAAGAAGAGCAAAGATGGAGGTGGAGATGGAGGTCGAGCAGAGTTGAA
TCCCTGGCCTGAATACATTAACACACGCCTTGATATGTACAACAAACTCAAAGCAGAACACGATTCTATC
CTGGCCGAAAAGGCAGCAAAAGATAGCAAGCCGATTAAAGTCACCCTGCCTGACGGCAAGCAGGTGGATG
CGGAGTCCTGGAAAACCACGCCGTATCAGATTGCTTGTGGAATTAGTCAGGGCCTGGCTGACAACACCGT
TGTTGCTAAGGTGAACAAAGTCGTTTGGGACCTGGACCGCCCGCTGGAGACAGATTGCACGTTGGAGCTG
CTCAAGTTTGAGGACGAGGAAGCGCAGGCCGTATACTGGCACTCCAGTGCCCACATAATGGGCGAGGCCA
TGGAGAGAGTCTATGGCGGATGTCTATGTTACGGCCCACCAATAGAAAACGGCTTCTATTATGATATGTA
CCTTGAAGAAGGGGGCGTGTCCAGCAATGACTTCTCTTCCCTGGAAACTTTGTGCAAGAAAATCATTAAA
GAGAAACAAACTTTCGAAAGATTGGAAGTTAAAAAGGAAACATTACTAGAAATGTTTAAGTACAACAAGT
TCAAGTGCCGGATATTGAATGAGAAAGTGAATACTCCGACCACGACTGTCTACAGATGTGGCCCTCTGAT
AGATCTCTGCCGGGGTCCTCATGTCCGACACACCGGCAAGATTAAGACTTTGAAGATACACAAGAATTCT
TCCACGTACTGGGAAGGCAAAGCAGACATGGAGACGCTCCAGCGGATCTATGGCATTTCATTCCCTGACC
CCAAGCTACTGAAAGAGTGGGAGAAGTTCCAAGAGGAAGCCAAAAACCGAGACCACAGGAAAATCGGGAG
GGACCAAGAACTATATTTCTTCCATGAACTTAGCCCTGGAAGTTGCTTTTTCCTGCCCAAAGGAGCCTAC
ATTTATAATACACTAATGGAATTTATCAGGAGTGAATATAGGAAAAGAGGGTTCCAGGAGGTCGTCACTC
CCAACATCTTCAATAGCCGGCTCTGGATGACCTCTGGCCACTGGCAGCACTACAGCGAGAACATGTTCTC
CTTTGAGGTGGAGAAGGAGCAGTTTGCACTTAAGCCCATGAACTGCCCGGGACACTGCCTGATGTTCGAT
CACCGGCCACGGTCCTGGCGAGAGCTGCCCCTGCGGCTAGCTGACTTTGGTGTGCTGCATAGGAATGAGC
TCTCGGGGGCTCTCACCGGGCTCACACGGGTCCGAAGATTCCAGCAGGATGACGCACACATCTTCTGTGC
CATGGAGCAGATTGAAGATGAAATCAAAGGTTGTTTGGATTTTCTTCGCACAGTATATAGTGTCTTTGGA
TTTTCATTTAAATTGAATCTTTCTACTCGCCCAGAAAAATTCCTTGGAGATATTGAAATATGGAACCAAG
CTGAGAAACAACTTGAAAACAGTTTGAATGAGTTCGGTGAGAAGTGGGAACTAAATCCTGGAGATGGAGC
CTTCTATGGGCCAAAGATTGACATACAGATAAAAGATGCCATCGGTCGCTACCACCAGTGTGCAACCATC
CAGCTGGACTTTCAGTTGCCCATCAGGTTTAACCTTACTTACGTCAGCCACGATGGCGATGATAAGAAAA
GGCCAGTGATTGTTCACAGAGCCATCCTGGGGTCGGTGGAAAGAATGATTGCCATCCTCACAGAAAACTA
TGGGGGCAAATGGCCTTTCTGGCTCTCTCCTCGCCAGGTGATGGTGGTCCCAGTGGGACCGACATGTGAT
GAATATGCCCAAAAGGTACGGCAACAATTCCATGATGCTAAATTCATGGCGGACACTGACCTGGATCCAG
GCTGTACCTTGAATAAGAAGATCAGAAACGCACAGTTAGCACAGTATAACTTCATCCTTGTTGTTGGTGA
AAAAGAGAAAGCCAGTGGCACGGTGAACATCCGCACGAGAGACAATAAGGTCCACGGAGAGCGGACAGTG
GAGGAGACGGTGCGGCGGCTGCAGCAGCTCAAGCAGACGCGCAGCAAGCAGGCAGAGGAGGAGTTCTAG

Translation (722 aa):
MSQEKASSPSGKMDGEKPVDASEEKRKEGGKKKSKDGGGDGGRAELNPWPEYINTRLDMYNKLKAEHDSI
LAEKAAKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKVVWDLDRPLETDCTLEL
LKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLETLCKKIIK
EKQTFERLEVKKETLLEMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNS
STYWEGKADMETLQRIYGISFPDPKLLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAY
IYNTLMEFIRSEYRKRGFQEVVTPNIFNSRLWMTSGHWQHYSENMFSFEVEKEQFALKPMNCPGHCLMFD
HRPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSVFG
FSFKLNLSTRPEKFLGDIEIWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQIKDAIGRYHQCATI
QLDFQLPIRFNLTYVSHDGDDKKRPVIVHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCD
EYAQKVRQQFHDAKFMADTDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKASGTVNIRTRDNKVHGERTV
EETVRRLQQLKQTRSKQAEEEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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