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Report for CCDS27162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27162.1 Public Mus musculus 14 Zdhhc20 23 108 98 CCDS HistoryNCBI Gene:75965Re-query CCDS DB by CCDS ID:27162.1Re-query CCDS DB by GeneID:75965See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089473.4 ENSMUSP00000086900.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089473.4Link to Ensembl Protein Viewer:ENSMUSP00000086900.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089473Re-query CCDS DB by Protein ID:ENSMUSP00000086900
Original member Current member NCBI NM_029492.5 NP_083768.4 Accepted alive Link to Nucleotide Sequence:NM_029492.5Link to Protein Sequence:NP_083768.4Re-query CCDS DB by Nucleotide ID:NM_029492Re-query CCDS DB by Protein ID:NP_083768Link to BLAST:NP_083768.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083768.4 368 Q5Y5T1-2 368 100% 0 0

Chromosomal Locations for CCDS 27162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 57837630 57837667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57839090 57839205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57840829 57840918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57843188 57843314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57846921 57847062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57856610 57856730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57857628 57857660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57858540 57858609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57865521 57865641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57873893 57873996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57878433 57878459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 57890063 57890180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCGCCCTGGACACTCTGGCGCTGCTGCCAACGCGTGGTGGGCTGGGTTCCGGTGCTCTTCATCACCT
TTGTGGTCGTCTGGTCCTACTACGCGTACGTGGTGGAGCTGTGCGTGAGTACTATTTCCAGAACAGGAGA
GAAAGGAAAGACCGTTGTTTACCTTGTGGCTTTCCATCTGTTCTTTGTTATGTTTGTATGGTCTTATTGG
ATGACAATATTCACGTCTCCTGCTAGCCCTTCCAAAGAGTTCTACTTGTCAAACTCTGAGAAGGAGCGTT
ATGAGAAGGAGTTCAGCCAAGAAAGACAGCAAGACATTTTGAGAAGAGCGGCAAGAGACCTGCCTATCTA
CACCACATCAGCTTCAAAGGCTATCCGATATTGTGAAAAATGTCAGTTGATTAAACCTGACCGAGCCCAT
CACTGCTCAGCATGTGACAGATGTGTTCTTAAGATGGATCATCACTGTCCATGGGTGAATAACTGTGTGG
GATTTACTAATTACAAATTCTTCATGCTGTTTTTGTTGTATTCTCTACTATATTGCCTTTTTGTGGCTGC
AACAGTTTTAGAGTATTTTATAAAATTTTGGACGAATGAACCAACAGTTTTAAATTTCCCCAGCGCAAAG
TTCCACGTACTGTTCCTTTTTTTTGTGTCTGCAATGTTCTTCGTCAGTGTGCTCTCACTATTTAGCTACC
ATTGCTGGCTGGTTGGAAAAAATAGAACGACAATAGAATCATTTCGTGCACCTATGTTTTCTTATGGAAT
AGATGGAAATGGTTTCTCTCTTGGATGCAGTAAAAATTGGAGACAAGTCTTTGGTGATGAAAAGAAATAT
TGGCTAGTTCCAATATTCTCAAGTTTGGGTGATGGTTGCAGTTTTCCAGCTCGCCTTGTGGGGATGGATC
CAGAACAAGCTTCTGTTGCAAACCAGAGTGACTACGTCAGAAGTATTGGCTCAAATCAACCTTTTCCTAT
CAAACCACTTAGTGAATCAAAAAACCGCTTATTGGACAGTGAATCTCAGTGGCTAGAGAATGGAGCTGAA
GAAGGAGTCACCAAATCAGGGACAAATAACCATGTTACAGTGGAAATAGAAAATTGA

Translation (368 aa):
MAPWTLWRCCQRVVGWVPVLFITFVVVWSYYAYVVELCVSTISRTGEKGKTVVYLVAFHLFFVMFVWSYW
MTIFTSPASPSKEFYLSNSEKERYEKEFSQERQQDILRRAARDLPIYTTSASKAIRYCEKCQLIKPDRAH
HCSACDRCVLKMDHHCPWVNNCVGFTNYKFFMLFLLYSLLYCLFVAATVLEYFIKFWTNEPTVLNFPSAK
FHVLFLFFVSAMFFVSVLSLFSYHCWLVGKNRTTIESFRAPMFSYGIDGNGFSLGCSKNWRQVFGDEKKY
WLVPIFSSLGDGCSFPARLVGMDPEQASVANQSDYVRSIGSNQPFPIKPLSESKNRLLDSESQWLENGAE
EGVTKSGTNNHVTVEIEN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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