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Report for CCDS26549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26549.1 Public Mus musculus 13 Ddx41 23 108 98 CCDS HistoryNCBI Gene:72935Re-query CCDS DB by CCDS ID:26549.1Re-query CCDS DB by GeneID:72935See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 26549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021956.8 ENSMUSP00000021956.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021956.8Link to Ensembl Protein Viewer:ENSMUSP00000021956.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021956Re-query CCDS DB by Protein ID:ENSMUSP00000021956
Original member Current member NCBI NM_134059.2 NP_598820.2 Accepted alive Link to Nucleotide Sequence:NM_134059.2Link to Protein Sequence:NP_598820.2Re-query CCDS DB by Nucleotide ID:NM_134059Re-query CCDS DB by Protein ID:NP_598820Link to BLAST:NP_598820.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598820.2 622 Q91VN6 622 100% 0 0

Chromosomal Locations for CCDS 26549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55530595 55530731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55531181 55531291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55531378 55531449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55531535 55531684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55531832 55531928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55532038 55532109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55532348 55532479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55532999 55533161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55533952 55534088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55534163 55534316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55534416 55534488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55535289 55535425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55535559 55535619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55535730 55535804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55535886 55536045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55536296 55536406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55536481 55536507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGAGGATTCGGAACCGGAGCGGAAGCGGGCACGCGCGGACGAGGCGACCGCGGGTGGGAGCCGCTCCG
AGGACGAGGATGAGGACGACGAGGACTACGTACCCTATGTGCCGTTGCGGCAGCGCCGGCAGCTACTGCT
CCAGAAGCTGCTGCAGCGAAGACGCAAGGGCGCTACGGAGGAAGAGCAGCAGGACAGTGGCAGTGAGCCC
CGAGGAGATGAGGACGACATCCCGCTGGGCCCTCAGTCCAATGTCAGCCTCCTGGATCAGCACCAGCACC
TCAAAGAGAAGGCTGAAGCACGCAAGGAGTCCGCCAAGGAAAAGCAACTGAAGGAAGAAGAAAAGATTCT
GGAGAGTGTGGCTGAAGGCCGAGCCTTGATGTCAGTGAAGGAAATGGCCAAAGGCATCACCTATGACGAT
CCAATCAAAACTAGTTGGACACCCCCGCGTTATGTCCTGAGCATGTCTGAGGAGCGGCATGAGCGAGTTC
GGAAGAAGTATCACATCCTGGTGGAGGGCGATGGTATCCCGCCACCCATCAAGAGCTTCAAGGAGATGAA
GTTTCCTGCAGCTATCCTTCGGGGCCTGAAAAAAAAGGGCATCCTCCACCCAACACCCATTCAGATCCAG
GGCATCCCTACCATTCTGTCCGGTCGGGACATGATCGGCATTGCCTTCACGGGGTCAGGCAAGACACTGG
TATTCACTCTGCCAGTCATCATGTTCTGCCTGGAACAGGAGAAGCGGTTGCCTTTCTCCAAGCGAGAGGG
GCCTTATGGGCTCATCATCTGCCCCTCGCGAGAGCTGGCTCGGCAGACCCACGGCATCCTGGAGTATTAC
TGCCGTCTGCTGCAGGAGGACAGCTCACCCCTCCTGCGCTGTGCCCTCTGCATCGGGGGCATGTCGGTGA
AGGAGCAGATGGAGACCATCCGACATGGTGTGCACATGATGGTAGCCACACCTGGACGCCTCATGGATTT
GCTGCAGAAGAAAATGGTCAGCCTAGACATCTGCCGCTACCTAGCCCTGGATGAAGCTGACCGCATGATT
GACATGGGCTTTGAGGGTGACATTCGTACCATCTTCTCCTACTTCAAGGGCCAACGGCAGACTCTGCTCT
TCAGTGCCACCATGCCGAAGAAGATTCAAAACTTTGCCAAGAGTGCCTTGGTAAAGCCTGTCACCATCAA
TGTGGGTCGTGCTGGAGCAGCCAGCCTTGATGTCATCCAGGAGGTGGAGTATGTGAAGGAGGAAGCCAAG
ATGGTGTACTTGCTTGAGTGCCTGCAGAAGACACCCCCACCTGTGCTCATCTTTGCAGAGAAGAAAGCAG
ATGTGGATGCCATTCACGAATACCTCCTGCTCAAGGGTGTTGAGGCTGTAGCCATTCATGGGGGCAAAGA
CCAGGAAGAGCGGACCAAGGCCATTGAGGCATTCCGGGAAGGCAAGAAGGACGTCTTAGTGGCCACAGAT
GTGGCCTCTAAAGGCCTGGACTTTCCTGCCATCCAGCATGTCATCAACTATGACATGCCTGAAGAGATAG
AAAACTATGTGCACAGAATTGGCCGCACTGGGCGTTCAGGAAACACAGGCATCGCTACCACCTTCATCAA
CAAGGCCTGCGATGAGTCAGTGCTCATGGACCTCAAAGCCTTGTTGCTGGAGGCCAAGCAGAAGGTACCA
CCTGTTCTGCAAGTGCTGCACTGTGGGGACGAGTCCATGCTGGACATTGGAGGAGAACGGGGCTGTGCCT
TCTGTGGAGGCCTTGGCCATCGGATCACTGACTGCCCCAAACTTGAAGCTATGCAGACCAAGCAGGTCAG
CAACATTGGCCGCAAGGACTACCTGGCCCACAGCTCCATGGACTTCTGA

Translation (622 aa):
MEDSEPERKRARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGATEEEQQDSGSEP
RGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDD
PIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQ
GIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY
CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMI
DMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK
MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD
VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP
PVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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