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Report for CCDS25964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25964.1 Public Mus musculus 12 Daam1 23 108 98 CCDS HistoryNCBI Gene:208846Re-query CCDS DB by CCDS ID:25964.1Re-query CCDS DB by GeneID:208846See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085299.3 ENSMUSP00000082406.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085299.3Link to Ensembl Protein Viewer:ENSMUSP00000082406.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085299Re-query CCDS DB by Protein ID:ENSMUSP00000082406
Original member Current member EBI ENSMUST00000223272.1 ENSMUSP00000152564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223272.1Link to Ensembl Protein Viewer:ENSMUSP00000152564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223272Re-query CCDS DB by Protein ID:ENSMUSP00000152564
Original member Current member NCBI NM_026102.3 NP_080378.2 Accepted alive Link to Nucleotide Sequence:NM_026102.3Link to Protein Sequence:NP_080378.2Re-query CCDS DB by Nucleotide ID:NM_026102Re-query CCDS DB by Protein ID:NP_080378Link to BLAST:NP_080378.2
Original member Current member NCBI NM_172464.3 NP_766052.2 Accepted alive Link to Nucleotide Sequence:NM_172464.3Link to Protein Sequence:NP_766052.2Re-query CCDS DB by Nucleotide ID:NM_172464Re-query CCDS DB by Protein ID:NP_766052Link to BLAST:NP_766052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080378.2 1077 Q8BPM0-1 1077 100% 0 0
NP_766052.2 1077 Q8BPM0-1 1077 100% 0 0

Chromosomal Locations for CCDS 25964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71895764 71895946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71915699 71915788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71936559 71936630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71942173 71942267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71944054 71944387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71945184 71945294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71945398 71945501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71946228 71946294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71946515 71946632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71946999 71947137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71947393 71947451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71951194 71951381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71951833 71952132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71952452 71952559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71958747 71958773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71959806 71959912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71971094 71971178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71975190 71975296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71976796 71976884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71977643 71977811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71980754 71980861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71982693 71982753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71985683 71985814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71988886 71989056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71989679 71989888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3234 nt):
ATGGCCCCACGGAAGAGAGGCGGCCGGGGGATTTCATTTATCTTTTGCTGTTTCCGAAACAATGACCATC
CAGAAATCACATATCGGCTTAGGAATGATAGCAACTTTGCACTTCAGACAATGGAGCCGGCGCTGCCCAT
GCCCCCTGTGGAGGAGCTCGATGTCATGTTCAGTGAACTTGTGGATGAACTTGACCTCACAGACAAACAC
AGGGAAGCCATGTTTGCACTTCCAGCAGAGAAAAAGTGGCAGATATACTGTAGCAAGAAAAAGGACCAGG
AAGAAAACAAGGGAGCAACCAGTTGGCCCGAGTTCTACATTGATCAGCTCAATTCCATGGCTGCTAGGAA
ATCTCTGCTGGCTTTAGAGAAGGAAGAAGAGGAGGAGAGGAGTAAAACCATCGAGAGTCTGAAGACAGCA
CTGAGAACCAAGCCCATGAGGTTTGTAACCAGATTCATCGACTTGGATGGCCTGTCATGTATTCTCAACT
TTCTGAAGACCATGGACTATGAGACCTCTGAGTCTCGGATACACACCTCCCTCATTGGCTGTATAAAGGC
ACTAATGAACAACTCTCAAGGCCGGGCCCATGTCCTGGCTCATTCTGAGAGTATCAATGTAATTGCTCAG
AGTCTGAGCACAGAGAACATTAAAACAAAGGTGGCCGTGCTGGAAATCCTGGGCGCTGTGTGCCTGGTTC
CTGGGGGCCACAAGAAAGTTCTGCAAGCTATGCTGCACTACCAGAAGTATGCCAGCGAGAGAACCCGCTT
CCAGACGTTAATTAATGACTTGGATAAAAGCACTGGGCGTTATCGGGATGAAGTAAGTCTCAAGACGGCC
ATCATGTCCTTCATCAATGCAGTGCTGAGCCAGGGAGCCGGAGTGGAGAGTTTGGACTTCAGGCTCCATC
TTCGCTATGAATTTCTGATGTTAGGAATTCAACCTGTTATAGATAAATTAAGGGAACATGAAAATTCAAC
ACTAGACAGGCATTTAGACTTTTTTGAAATGCTCCGAAATGAAGATGAACTAGAATTTGCCAAAAGATTT
GAACTGGTTCACATAGACACAAAAAGCGCCACTCAGATGTTTGAGCTGACCAGGAGGAGGCTAACCCACA
GCGAAGCCTACCCCCACTTCATGTCCATTCTGCACCATTGCCTCCAGATGCCTTACAAGAGGAGTGGTAA
CACAGTTCAGTACTGGCTGCTGTTAGACAGAATCATACAGCAGATAGTTATCCAGAATGACAAAGGGCAG
GATCCCGACTCCACACCTCTGGAAAACTTTAATATCAAGAACGTCGTAAGAATGTTGGTTAATGAAAATG
AAGTTAAGCAATGGAAAGAGCAGGCAGAGAAGATGAGGAAAGAGCACAATGAGCTACAACAGAAGCTGGA
GAAGAAAGAGAGAGAATGTGATGCTAAGACCCAAGAGAAGGAAGAAATGATGCAGACCTTAAACAAGATG
AAAGAGAAGCTGGAAAAGGAGACAACTGAGCACAAGCAAGTTAAGCAGCAGGTGGCAGACCTCACGGCGC
AGCTCCACGAGCTGAACAGGAGGGCCGTCTGTGCAGCAGTCCCAGGAGGACCCTCACCCGGAGCCCCTGG
AGGACCCTTTCCTTCCTCTGGGTTGGGGTCTCTTCTCCCTCCCCCACCACCCCCACTCCTTTCAGGTGGA
GCACTTCCTCCTCCACCACCTCCCCTCCCTCCTGGGGGTCCTCCTCCTCCCCCAGGGCCTCCTCCCTTAG
GAGGAGTTCTGCCACCTCCTGGTGCTCCAGTGAGTCTAACACTCAAGAAGAAGAATATTCCCCAGCCCAC
CAATGCCCTGAAATCCTTCAACTGGTCCAAGTTGCCTGAGAACAAATTGGATGGAACAGTATGGACTGAA
ATTGATGATACCAAAGTCTTCAAAATTCTAGACCTTGAAGACCTAGAAAGAACGTTCTCTGCCTACCAAA
GACAGCAGGAGTTCTTTGTGAACAACTCCAAGCAGAAAGAAGCAGATGCCATTGATGACACACTGAGTTC
CAAACTTAAAGTCAAAGAGCTGTCAGTGATTGATGGTCGGAGAGCTCAGAATTGCAACATCCTTCTGTCG
AGGTTGAAATTATCCAATGATGAAATCAAGCGGGCAATTCTAACAATGGATGAACAGGAGGATCTGCCCA
AGGACATGTTAGAACAGCTTTTGAAATTCGTTCCTGAGAAAAGCGACATCGACCTGCTAGAGGAACACAA
GCATGAGCTGGATCGGATGGCCAAGGCTGACCGCTTCCTGTTTGAGATGAGCAGAATTAATCATTACCAG
CAAAGACTGCAATCACTGTACTTCAAAAAGAAGTTTGCAGAGCGTGTGGCAGAAGTGAAGCCCAAAGTAG
AAGCGATTCGCTCTGGCTCTGAGGAGGTGTTCAGGAGCCGCGCCCTCAAGCAGCTCCTGGAGGTGGTCTT
GGCTTTTGGAAATTATATGAATAAAGGACAAAGAGGCAATGCATATGGATTCAAGATCTCCAGCCTCAAC
AAGATAGCGGATACCAAATCCAGTATTGACAAGAACATTACTCTTTTGCACTATCTAATAACTATTGTGG
AGAATAAGTACCCCAAAGTCCTCAACCTAAGCGAAGAGTTGCGGGATATTCCTCAAGCAGCGAAAGTAAA
CATGACTGAGCTGGACAAGGAGATCAGCACCCTGAGGAGTGGCCTGAAAGCTGTAGAGACGGAGCTGGAG
TATCAGAAGTCTCAGCCCCCACAGCCTGGAGACAAGTTCGTGTCTGTTGTCAGCCAGTTCATCACCCTGG
CTAGCTTCAGCTTCTCAGATGTTGAAGATCTTCTAGCAGAAGCTAAAGAGCTGTTCACTAAAGCAGTGAA
GCACTTTGGGGAAGAGGCTGGCAAGATCCAGCCAGATGAGTTCTTCGGGATCTTTGATCAGTTTCTTCAG
GCCGTGGCCGAAGCGAAACAGGAAAATGAGAACATGAGAAAAAGGAAGGAGGAGGAGGAACGGCGGGCTC
GCCTGGAAGCTCAGCTCAAAGAGCAGCGGGAGAGGGAGCGGAAGGTGAGGAAGGCCAAGGAGAGCAGTGA
AGAGAGTGGAGAGTTTGACGACCTGGTCTCGGCGCTGCGCTCAGGAGAGGTGTTCGACAAAGACCTTTCA
AAACTCAAACGGAACCGGAAACGCATTTCCAACCAGGTGACGGACAGCAGCCGGGAGCGACCAATCACAA
AACTTAATTTTTAA

Translation (1077 aa):
MAPRKRGGRGISFIFCCFRNNDHPEITYRLRNDSNFALQTMEPALPMPPVEELDVMFSELVDELDLTDKH
REAMFALPAEKKWQIYCSKKKDQEENKGATSWPEFYIDQLNSMAARKSLLALEKEEEEERSKTIESLKTA
LRTKPMRFVTRFIDLDGLSCILNFLKTMDYETSESRIHTSLIGCIKALMNNSQGRAHVLAHSESINVIAQ
SLSTENIKTKVAVLEILGAVCLVPGGHKKVLQAMLHYQKYASERTRFQTLINDLDKSTGRYRDEVSLKTA
IMSFINAVLSQGAGVESLDFRLHLRYEFLMLGIQPVIDKLREHENSTLDRHLDFFEMLRNEDELEFAKRF
ELVHIDTKSATQMFELTRRRLTHSEAYPHFMSILHHCLQMPYKRSGNTVQYWLLLDRIIQQIVIQNDKGQ
DPDSTPLENFNIKNVVRMLVNENEVKQWKEQAEKMRKEHNELQQKLEKKERECDAKTQEKEEMMQTLNKM
KEKLEKETTEHKQVKQQVADLTAQLHELNRRAVCAAVPGGPSPGAPGGPFPSSGLGSLLPPPPPPLLSGG
ALPPPPPPLPPGGPPPPPGPPPLGGVLPPPGAPVSLTLKKKNIPQPTNALKSFNWSKLPENKLDGTVWTE
IDDTKVFKILDLEDLERTFSAYQRQQEFFVNNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLS
RLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQ
QRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSRALKQLLEVVLAFGNYMNKGQRGNAYGFKISSLN
KIADTKSSIDKNITLLHYLITIVENKYPKVLNLSEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELE
YQKSQPPQPGDKFVSVVSQFITLASFSFSDVEDLLAEAKELFTKAVKHFGEEAGKIQPDEFFGIFDQFLQ
AVAEAKQENENMRKRKEEEERRARLEAQLKEQRERERKVRKAKESSEESGEFDDLVSALRSGEVFDKDLS
KLKRNRKRISNQVTDSSRERPITKLNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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