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Report for CCDS25776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25776.1 Public Mus musculus 11 Fn3k 23 108 98 CCDS HistoryNCBI Gene:63828Re-query CCDS DB by CCDS ID:25776.1Re-query CCDS DB by GeneID:63828See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026175.8 ENSMUSP00000026175.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026175.8Link to Ensembl Protein Viewer:ENSMUSP00000026175.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026175Re-query CCDS DB by Protein ID:ENSMUSP00000026175
Original member Current member NCBI NM_022014.4 NP_071297.1 Accepted alive Link to Nucleotide Sequence:NM_022014.4Link to Protein Sequence:NP_071297.1Re-query CCDS DB by Nucleotide ID:NM_022014Re-query CCDS DB by Protein ID:NP_071297Link to BLAST:NP_071297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071297.1 309 Q9ER35 309 100% 0 0

Chromosomal Locations for CCDS 25776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121434989 121435129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121437273 121437424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121439286 121439377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121440071 121440153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121448882 121449004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121450112 121450450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAGCAGCTGCTGCGCGCCCAGCTTCACACCACAACACTGCGGGCCTTTGGGAGCTCCGGAGGGGGCT
GCATCAGCGAGGGCTATGCCTACTACACTGACAGTGGCCCCGTGTTTGTCAAGGTCAATCGCAGGACACA
GGCCCGGCAGATGTTTGAGGGAGAGATGGCGAGCCTGGAGGCCCTCCGCAACACTGGCTTGGTGCGGGTT
CCTAAGCCCATGAAGGTGATTGACTTGCCAGGAGGTGGGGCTGTCTTTGTGATGGAGCACTTGAAGATGA
AGAGCCTTAGCAGTCAGGCATCAAAGCTCGGGGAACAGATGGCAGACCTGCACCTTTACAATCAGAAGCT
CAGGGAGAAGTCCAAGACTCGGCAGAACACAGTGGGCTGTGGGGCGGAGGGTGCTGAGCCCCAGGGTGTG
ACCAAGTTTGGCTTTCACACAGTGACATGCTGTGGCTTTATCCCACAGGTGAATGAATGGCAGGAGGACT
GGCCGACCTTCTTCACTCGACACCGGCTCCAAGCTCAGTTGGATCTCATTGAAAAGGACTATGCTGACCG
AGAGACACAAGAGCTGTGGTCAAGGCTACAGGTGAAGATCCCGGATCTGTTTGCGGGTATAGAGATTGTC
CCTGCCCTGCTCCATGGAGACCTCTGGTCTGGAAATGTGGCTGAGGATGACCAGGGACCCGTAATTTATG
ATCCAGCCTCCTTCTATGGCCATTCTGAGTTTGAACTGGCCATTGCATCGATGTTTGGGGGGTTCCCCAG
ATCCTTCTTCACTGCCTACCATCGGAAGATCCCAAAGGCTCCAGGGTTCGACAAGCGCCTGCTGCTGTAC
CAGCTCTTTAACTACCTAAACCACTGGAACCACTTTGGACGGGAGTACAGAAGCCCGTCCCTGGGGGTGA
TGAGGAAGCTGCTCAGGTAG

Translation (309 aa):
MEQLLRAQLHTTTLRAFGSSGGGCISEGYAYYTDSGPVFVKVNRRTQARQMFEGEMASLEALRNTGLVRV
PKPMKVIDLPGGGAVFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREKSKTRQNTVGCGAEGAEPQGV
TKFGFHTVTCCGFIPQVNEWQEDWPTFFTRHRLQAQLDLIEKDYADRETQELWSRLQVKIPDLFAGIEIV
PALLHGDLWSGNVAEDDQGPVIYDPASFYGHSEFELAIASMFGGFPRSFFTAYHRKIPKAPGFDKRLLLY
QLFNYLNHWNHFGREYRSPSLGVMRKLLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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