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Report for CCDS25582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25582.1 Public Mus musculus 11 Wipi1 23 108 98 CCDS HistoryNCBI Gene:52639Re-query CCDS DB by CCDS ID:25582.1Re-query CCDS DB by GeneID:52639See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103060.9 ENSMUSP00000099349.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103060.9Link to Ensembl Protein Viewer:ENSMUSP00000099349.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103060Re-query CCDS DB by Protein ID:ENSMUSP00000099349
Original member Current member NCBI NM_145940.2 NP_666052.1 Accepted alive Link to Nucleotide Sequence:NM_145940.2Link to Protein Sequence:NP_666052.1Re-query CCDS DB by Nucleotide ID:NM_145940Re-query CCDS DB by Protein ID:NP_666052Link to BLAST:NP_666052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666052.1 446 Q8R3E3-1 446 100% 0 0

Chromosomal Locations for CCDS 25582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109573920 109573967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109577057 109577157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109577575 109577693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109578291 109578398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109579627 109579791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109582372 109582479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109583127 109583197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109584075 109584167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109585095 109585192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109597103 109597199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109603673 109603842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109605885 109605967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109611233 109611312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGAGGCCGAAGCCGCAGATGCCCCTCCGGGCCGAGTGGAGGCGGCGCTCAGCTGCTTCTCTTTCAACC
AAGACTGCACATCCCTAGCGATTGGAACCAAGGCCGGTTACAAGCTGTTTTCTCTGAGTTCTGTGGAGCA
GCTTGACCAAGTCCATGGAAGCAATGAAATCCCTGACGTGTATATCGTGGAGCGCCTCTTCTCCAGCAGC
CTGGTTGTAGTGGTCAGTCACACAAAACCTCGGCAGATGAACGTCTACCATTTCAAGAAAGGCACTGAGA
TCTGTAATTACAGCTACTCCAGCAACATTTTGTCTATTCGGCTCAACCGACAGAGGCTGCTGGTCTGCCT
GGAAGAATCCATCTATATCCACAACATTAAGGATATGAAGTTATTGAAGACCGTCCTGGATATTCCCTCA
AACCCAACAGGTCTCTGTGCCCTGTCTATCAACCATTCCAACTCTTACCTGGCCTATCCTGGAAGCCAGA
GTACAGGCGAGATTGTACTCTATGATGGAAACTCCCTGAAAACGGTGTGCACCATTGCTGCCCACGAGGG
GACGCTGGCCGCTATCACCTTCAACTCCTCGGGCTCCAAGCTAGCAAGCGCGTCTGAAAAAGGCACTGTC
ATCCGAGTGTTCTCTGTTCCCGAGGGCCAGAAACTCTATGAGTTTCGTCGAGGAATGAAAAGGTATGTGA
CAATCAGCTCCCTGGTGTTCAGTATGGACTCCCAGTTCCTGTGTGCCTCCAGCAACACGGAGACCGTGCA
CATCTTCAAGATGGAACACCTGACAGACAGCCGCCCAGAAGAGCCTTCCACCTGGAGCGGCTACATGGGA
AAGATGTTCATGGCAGCTACCAACTACCTCCCCGCCCAGGTGTCGGACATGATGAACCAGGACAGGGCTT
TCGCCACAGGACGCCTGAACTTCTCTGGGCAGAAGAACATTTGCACCCTGTCCACGATCCAGAAACTGCC
GCGGTTGCTGGTGGCCTCCTCCGACGGACACCTTTACATCTACAACTTGGACCCACAGGATGGAGGAGAA
TGTGTCCTAATCAAAACCCACAGCTTGCTTAGCTCAGGAACAACAGAAGAGAACAAAGAAAATGACCTCA
GACCTTCCTTACCTCCATCTTATGCTGCAACTGTAGCAAGGCCCAGCACGTCTGCAGCCTCCACGGTGCC
AGGATACTCTGAGGACGGCGGGGCGCTCCGAGGGGAAGTTATTCCGGAACACGAGTTTGCGACGGGACCA
GTGTGTCTAGACGACGAGAATGAGTTTCCCCCTATAATCTTGTGCCGTGGAAGTCAGAAGGGCAAAACGA
AGCAGTCCTGA

Translation (446 aa):
MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSS
LVVVVSHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPS
NPTGLCALSINHSNSYLAYPGSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSKLASASEKGTV
IRVFSVPEGQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTETVHIFKMEHLTDSRPEEPSTWSGYMG
KMFMAATNYLPAQVSDMMNQDRAFATGRLNFSGQKNICTLSTIQKLPRLLVASSDGHLYIYNLDPQDGGE
CVLIKTHSLLSSGTTEENKENDLRPSLPPSYAATVARPSTSAASTVPGYSEDGGALRGEVIPEHEFATGP
VCLDDENEFPPIILCRGSQKGKTKQS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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