NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25495.1 Public Mus musculus 11 Ubtf 23 108 98 CCDS HistoryNCBI Gene:21429Re-query CCDS DB by CCDS ID:25495.1Re-query CCDS DB by GeneID:21429See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079589.10 ENSMUSP00000078539.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079589.10Link to Ensembl Protein Viewer:ENSMUSP00000078539.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079589Re-query CCDS DB by Protein ID:ENSMUSP00000078539
Original member Current member EBI ENSMUST00000107123.9 ENSMUSP00000102740.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107123.9Link to Ensembl Protein Viewer:ENSMUSP00000102740.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107123Re-query CCDS DB by Protein ID:ENSMUSP00000102740
Original member Current member EBI ENSMUST00000173870.7 ENSMUSP00000133611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173870.7Link to Ensembl Protein Viewer:ENSMUSP00000133611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173870Re-query CCDS DB by Protein ID:ENSMUSP00000133611
Original member Current member EBI ENSMUST00000174302.7 ENSMUSP00000133844.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174302.7Link to Ensembl Protein Viewer:ENSMUSP00000133844.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174302Re-query CCDS DB by Protein ID:ENSMUSP00000133844
Original member NCBI NM_001362544.1 NP_001349473.1 Updated not alive Link to Nucleotide Sequence:NM_001362544.1Link to Protein Sequence:NP_001349473.1Re-query CCDS DB by Nucleotide ID:NM_001362544Re-query CCDS DB by Protein ID:NP_001349473
Current member NCBI NM_001362544.2 NP_001349473.1 Accepted alive Link to Nucleotide Sequence:NM_001362544.2Link to Protein Sequence:NP_001349473.1Re-query CCDS DB by Nucleotide ID:NM_001362544Re-query CCDS DB by Protein ID:NP_001349473Link to BLAST:NP_001349473.1
Original member NCBI NM_001362545.1 NP_001349474.1 Updated not alive Link to Nucleotide Sequence:NM_001362545.1Link to Protein Sequence:NP_001349474.1Re-query CCDS DB by Nucleotide ID:NM_001362545Re-query CCDS DB by Protein ID:NP_001349474
Current member NCBI NM_001362545.2 NP_001349474.1 Accepted alive Link to Nucleotide Sequence:NM_001362545.2Link to Protein Sequence:NP_001349474.1Re-query CCDS DB by Nucleotide ID:NM_001362545Re-query CCDS DB by Protein ID:NP_001349474Link to BLAST:NP_001349474.1
Original member NCBI NM_011551.7 NP_035681.2 Updated not alive Link to Nucleotide Sequence:NM_011551.7Link to Protein Sequence:NP_035681.2Re-query CCDS DB by Nucleotide ID:NM_011551Re-query CCDS DB by Protein ID:NP_035681
Current member NCBI NM_011551.8 NP_035681.2 Accepted alive Link to Nucleotide Sequence:NM_011551.8Link to Protein Sequence:NP_035681.2Re-query CCDS DB by Nucleotide ID:NM_011551Re-query CCDS DB by Protein ID:NP_035681Link to BLAST:NP_035681.2

Chromosomal Locations for CCDS 25495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102306641 102306766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102306856 102306999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102307079 102307150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102307244 102307291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102307949 102308138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102308229 102308317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102308699 102308809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102308894 102309049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102309397 102309552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102309654 102309767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102309868 102309909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102310191 102310332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102310443 102310576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102310926 102311036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102311380 102311500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102311754 102311818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102313898 102314053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102314139 102314222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102314864 102315039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102316349 102316406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2295 nt):
ATGAACGGAGAAGCGGACTGTCCCACAGACCTGGAAATGGCCGCCCCCAAAGGCCAAGACCGCTGGTCCC
AGGAAGATATGCTGACTCTGCTGGAATGCATGAAGAACAACCTCCCATCCAACGACAGCTCCAAGTTCAA
AACCACAGAGTCGCACATGGATTGGGAAAAAGTTGCGTTTAAGGATTTTTCAGGAGATATGTGCAAGCTC
AAATGGGTGGAGATTTCTAACGAGGTAAGGAAGTTCCGTACATTGACAGAATTGATCCTTGATGCTCAGG
AACATGTTAAAAACCCTTACAAAGGCAAAAAGCTCAAGAAACACCCGGATTTTCCAAAGAAACCTCTCAC
CCCTTACTTCCGCTTCTTCATGGAGAAGCGGGCCAAGTACGCGAAGCTCCACCCGGAGATGAGCAACCTG
GACCTGACTAAGATCCTGTCTAAGAAATACAAGGAACTTCCAGAGAAGAAGAAGATGAAATATATTCAGG
ACTTCCAGAGGGAGAAACAGGAGTTCGAGCGAAACCTGGCCCGATTCAGGGAGGATCACCCTGACCTTAT
CCAGAATGCCAAGAAGTCGGACATCCCCGAGAAACCCAAAACTCCCCAGCAACTGTGGTACACCCACGAG
AAGAAGGTGTATCTCAAAGTGCGGCCGGATGCCACTACGAAGGAGGTGAAGGACTCCCTGGGGAAGCAGT
GGTCTCAGCTCTCGGACAAAAAGAGGCTGAAATGGATTCATAAGGCCCTGGAGCAGCGGAAGGAGTACGA
GGAGATTATGCGGGACTATATCCAGAAGCACCCTGAGCTGAACATCAGTGAGGAAGGCATCACCAAGTCC
ACCCTCACCAAGGCCGAGCGCCAGCTCAAGGACAAGTTCGATGGGCGACCTACCAAGCCGCCTCCGAACA
GCTACTCCCTGTACTGTGCGGAGCTCATGGCCAACATGAAGGATGTGCCCAGCACAGAGCGCATGGTGCT
ATGCAGCCAGCAATGGAAGCTGCTCTCTCAGAAGGAGAAGGATGCCTATCACAAGAAATGTGACCAGAAA
AAGAAAGATTATGAGGTAGAGCTGCTGCGGTTCCTTGAGAGCTTGCCGGAGGAAGAGCAGCAGCGGGTTC
TGGGGGAGGAGAAGATGCTGAACATCAATAAGAAGCAAACCACCAGTCCGGCCTCCAAGAAGCCTTCACA
GGAAGGTGGCAAGGGTGGCTCCGAGAAGCCCAAGCGGCCTGTGTCTGCTATGTTCATCTTCTCTGAGGAG
AAGCGAAGGCAGCTACAGGAGGAACGACCTGAGCTCTCCGAAAGCGAACTGACCCGCCTTCTGGCCCGCA
TGTGGAACGACTTGTCCGAGAAGAAGAAGGCTAAATACAAGGCCCGGGAGGCTGCGCTGAAGGCGCAGTC
TGAGAGGAAGCCGGGCGGGGAGCGTGAAGATAGGGGCAAGCTGCCGGAGTCGCCCAAGAGGGCTGAGGAG
ATCTGGCAGCAGAGTGTCATCGGAGACTATCTGGCCCGCTTCAAGAATGACCGGGTGAAAGCCTTGAAAG
CCATGGAGATGACTTGGAACAACATGGAGAAGAAGGAGAAGCTGATGTGGATTAAGAAGGCAGCAGAAGA
CCAAAAACGATATGAGAGAGAGTTAAGTGAGATGCGGGCCCCTCCAGCTGCTACAAACTCTTCCAAGAAG
ATGAAGTTCCAGGGAGAACCCAAGAAACCTCCTATGAACGGTTACCAGAAGTTCTCCCAGGAGCTGCTGT
CCAATGGGGAGCTAAATCACCTGCCGCTGAAGGAGCGCATGGTGGAGATTGGCAGCCGCTGGCAGCGCAT
CTCCCAGAGCCAGAAGGAGCACTATAAGAAGCTGGCGGAGGAGCAACAGAGGCAGTACAAGGTGCACTTG
GACCTCTGGGTCAAGAGCCTGTCTCCCCAGGACCGCGCAGCATACAAAGAATACATCTCCAATAAACGTA
AGAACATGACCAAGCTCCGAGGCCCAAACCCCAAGTCTAGCCGGACCACCCTGCAGTCCAAGTCGGAGTC
CGAGGAGGATGACGATGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAAGAGGAAGATGATGAGAACGGT
GACTCTTCTGAGGATGGCGGGGACTCTTCTGAGTCCAGCAGTGAAGATGAAAGCGAGGATGGGGATGAGA
ATGATGATGACGACGACGATGAAGATGACGAAGATGACGACGATGAGGATGAAGACAACGAGTCTGAGGG
CAGTAGCTCCAGCTCTTCATCCTCAGGGGACTCTTCGGATTCTGACTCCAACTGA

Translation (764 aa):
MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWEKVAFKDFSGDMCKL
KWVEISNEVRKFRTLTELILDAQEHVKNPYKGKKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNL
DLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHE
KKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHPELNISEEGITKS
TLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQK
KKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQTTSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEE
KRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKPGGEREDRGKLPESPKRAEE
IWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKK
MKFQGEPKKPPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHL
DLWVKSLSPQDRAAYKEYISNKRKNMTKLRGPNPKSSRTTLQSKSESEEDDDEEEEDDEEEEEEEDDENG
DSSEDGGDSSESSSEDESEDGDENDDDDDDEDDEDDDDEDEDNESEGSSSSSSSSGDSSDSDSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH