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Report for CCDS2547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2547.1 Public Homo sapiens 2 HDLBP 24 110 108 CCDS HistoryNCBI Gene:3069Re-query CCDS DB by CCDS ID:2547.1Re-query CCDS DB by GeneID:3069See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310931.10 ENSP00000312042.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310931.10Link to Ensembl Protein Viewer:ENSP00000312042.4Re-query CCDS DB by Nucleotide ID:ENST00000310931Re-query CCDS DB by Protein ID:ENSP00000312042
Original member Current member EBI ENST00000391975.5 ENSP00000375836.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391975.5Link to Ensembl Protein Viewer:ENSP00000375836.1Re-query CCDS DB by Nucleotide ID:ENST00000391975Re-query CCDS DB by Protein ID:ENSP00000375836
Original member Current member EBI ENST00000391976.6 ENSP00000375837.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391976.6Link to Ensembl Protein Viewer:ENSP00000375837.2Re-query CCDS DB by Nucleotide ID:ENST00000391976Re-query CCDS DB by Protein ID:ENSP00000375837
Original member Current member NCBI NM_001320965.3 NP_001307894.1 Accepted alive Link to Nucleotide Sequence:NM_001320965.3Link to Protein Sequence:NP_001307894.1Re-query CCDS DB by Nucleotide ID:NM_001320965Re-query CCDS DB by Protein ID:NP_001307894Link to BLAST:NP_001307894.1
Original member Current member NCBI NM_001320966.3 NP_001307895.1 Accepted alive Link to Nucleotide Sequence:NM_001320966.3Link to Protein Sequence:NP_001307895.1Re-query CCDS DB by Nucleotide ID:NM_001320966Re-query CCDS DB by Protein ID:NP_001307895Link to BLAST:NP_001307895.1
Original member Current member NCBI NM_005336.6 NP_005327.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005336.6Link to Protein Sequence:NP_005327.1Re-query CCDS DB by Nucleotide ID:NM_005336Re-query CCDS DB by Protein ID:NP_005327Link to BLAST:NP_005327.1
Original member Current member NCBI NM_203346.6 NP_976221.1 Accepted alive Link to Nucleotide Sequence:NM_203346.6Link to Protein Sequence:NP_976221.1Re-query CCDS DB by Nucleotide ID:NM_203346Re-query CCDS DB by Protein ID:NP_976221Link to BLAST:NP_976221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307894.1 1268 Q00341-1 1268 100% 0 0
NP_001307895.1 1268 Q00341-1 1268 100% 0 0
NP_005327.1 1268 Q00341-1 1268 100% 0 0
NP_976221.1 1268 Q00341-1 1268 100% 0 0

Chromosomal Locations for CCDS 2547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 241229601 241229687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241229833 241229961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241230153 241230269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241230759 241230944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241233820 241233963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241235121 241235255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241235490 241235594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241236615 241236769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241238649 241238787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241239602 241239820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241239901 241240122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241242460 241242678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241246752 241246883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241247056 241247142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241248003 241248116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241248244 241248348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241249841 241249980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241252957 241253035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241253393 241253497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241255051 241255158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241255374 241255580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241256184 241256399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241256600 241256806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241262711 241262926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241264448 241264605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 241266794 241266869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3807 nt):
ATGAGTTCCGTTGCAGTTTTGACCCAAGAGAGTTTTGCTGAACACCGAAGTGGGCTGGTTCCGCAACAAA
TCAAAGTTGCCACTCTAAATTCAGAAGAGGAGAGCGACCCTCCAACCTACAAGGATGCCTTCCCTCCACT
TCCTGAGAAAGCTGCTTGCCTGGAAAGTGCCCAGGAACCCGCTGGAGCCTGGGGGAACAAGATCCGACCC
ATCAAGGCTTCTGTCATCACTCAGGTGTTCCATGTACCCCTGGAGGAGAGAAAATACAAGGATATGAACC
AGTTTGGAGAAGGTGAACAAGCAAAAATCTGCCTTGAGATCATGCAGAGAACTGGTGCTCACTTGGAGCT
GTCTTTGGCCAAAGACCAAGGCCTCTCCATCATGGTGTCAGGAAAGCTGGATGCTGTCATGAAAGCTCGG
AAGGACATTGTTGCTAGACTGCAGACTCAGGCCTCAGCAACTGTTGCCATTCCCAAAGAACACCATCGCT
TTGTTATTGGCAAAAATGGAGAGAAACTGCAAGACTTGGAGCTAAAAACTGCAACCAAAATCCAGATCCC
ACGCCCAGATGACCCCAGCAATCAGATCAAGATCACTGGCACCAAAGAGGGCATCGAGAAAGCTCGCCAT
GAAGTCTTACTCATCTCTGCCGAGCAGGACAAACGTGCTGTGGAGAGGCTAGAAGTAGAAAAGGCATTCC
ACCCCTTCATCGCTGGGCCGTATAATAGACTGGTTGGCGAGATCATGCAGGAGACAGGCACGCGCATCAA
CATCCCCCCACCCAGCGTGAACCGGACAGAGATTGTCTTCACTGGAGAGAAGGAACAGTTGGCTCAGGCT
GTGGCTCGCATCAAGAAGATTTATGAGGAGAAGAAAAAGAAGACTACAACCATTGCAGTGGAAGTGAAGA
AATCCCAACACAAGTATGTCATTGGGCCCAAGGGCAATTCATTGCAGGAGATCCTTGAGAGAACTGGAGT
TTCCGTTGAGATCCCACCCTCAGACAGCATCTCTGAGACTGTAATACTTCGAGGCGAACCTGAAAAGTTA
GGTCAGGCGTTGACTGAAGTCTATGCCAAGGCCAATAGCTTCACCGTCTCCTCTGTCGCCGCCCCTTCCT
GGCTTCACCGTTTCATCATTGGCAAGAAAGGGCAGAACCTGGCCAAAATCACTCAGCAGATGCCAAAGGT
TCACATCGAGTTCACAGAGGGCGAAGACAAGATCACCCTGGAGGGCCCTACAGAGGATGTCAATGTGGCC
CAGGAACAGATAGAAGGCATGGTCAAAGATTTGATTAACCGGATGGACTATGTGGAGATCAACATCGACC
ACAAGTTCCACAGGCACCTCATTGGGAAGAGCGGTGCCAACATAAACAGAATCAAAGACCAGTACAAGGT
GTCCGTGCGCATCCCTCCTGACAGTGAGAAGAGCAATTTGATCCGCATCGAGGGGGACCCACAGGGCGTG
CAGCAGGCCAAGCGAGAGCTGCTGGAGCTTGCATCTCGCATGGAAAATGAGCGTACCAAGGATCTAATCA
TTGAGCAAAGATTTCATCGCACAATCATTGGGCAGAAGGGTGAACGGATCCGTGAAATTCGTGACAAATT
CCCAGAGGTCATCATTAACTTTCCAGACCCAGCACAAAAAAGTGACATTGTCCAGCTCAGAGGACCTAAG
AATGAGGTGGAAAAATGCACAAAATACATGCAGAAGATGGTGGCAGATCTGGTGGAAAATAGCTATTCAA
TTTCTGTTCCGATCTTCAAACAGTTTCACAAGAATATCATTGGGAAAGGAGGCGCAAACATTAAAAAGAT
TCGTGAAGAAAGCAACACCAAAATCGACCTTCCAGCAGAGAATAGCAATTCAGAGACCATTATCATCACA
GGCAAGCGAGCCAACTGCGAAGCTGCCCGGAGCAGGATTCTGTCTATTCAGAAAGACCTGGCCAACATAG
CCGAGGTAGAGGTCTCCATCCCTGCCAAGCTGCACAACTCCCTCATTGGCACCAAGGGCCGTCTGATCCG
CTCCATCATGGAGGAGTGCGGCGGGGTCCACATTCACTTTCCCGTGGAAGGTTCAGGAAGCGACACCGTT
GTTATCAGGGGCCCTTCCTCGGATGTGGAGAAGGCCAAGAAGCAGCTCCTGCATCTGGCGGAGGAGAAGC
AAACCAAGAGTTTCACTGTTGACATCCGCGCCAAGCCAGAATACCACAAATTCCTCATCGGCAAGGGGGG
CGGCAAAATTCGCAAGGTGCGCGACAGCACTGGAGCACGTGTCATCTTCCCTGCGGCTGAGGACAAGGAC
CAGGACCTGATCACCATCATTGGAAAGGAGGACGCCGTCCGAGAGGCACAGAAGGAGCTGGAGGCCTTGA
TCCAAAACCTGGATAATGTGGTGGAAGACTCCATGCTGGTGGACCCCAAGCACCACCGCCACTTCGTCAT
CCGCAGAGGCCAGGTCTTGCGGGAGATTGCTGAAGAGTATGGCGGGGTGATGGTCAGCTTCCCACGCTCT
GGCACACAGAGCGACAAAGTCACCCTCAAGGGCGCCAAGGACTGTGTGGAGGCAGCCAAGAAACGCATTC
AGGAGATCATTGAGGACCTGGAAGCTCAGGTGACATTAGAATGTGCTATACCCCAGAAATTCCATCGATC
TGTCATGGGCCCCAAAGGTTCCAGAATCCAGCAGATTACTCGGGATTTCAGTGTTCAAATTAAATTCCCA
GACAGAGAGGAGAACGCAGTTCACAGTACAGAGCCAGTTGTCCAGGAGAATGGGGACGAAGCTGGGGAGG
GGAGAGAGGCTAAAGATTGTGACCCCGGCTCTCCAAGGAGGTGTGACATCATCATCATCTCTGGCCGGAA
AGAAAAGTGTGAGGCTGCCAAGGAAGCTCTGGAGGCATTGGTTCCTGTCACCATTGAAGTAGAGGTGCCC
TTTGACCTTCACCGTTACGTTATTGGGCAGAAAGGAAGTGGGATCCGCAAGATGATGGATGAGTTTGAGG
TGAACATACATGTCCCGGCACCTGAGCTGCAGTCTGACATCATCGCCATCACGGGCCTCGCTGCAAATTT
GGACCGGGCCAAGGCTGGACTGCTGGAGCGTGTGAAGGAGCTACAGGCCGAGCAGGAGGACCGGGCTTTA
AGGAGTTTTAAGCTGAGTGTCACTGTAGACCCCAAATACCATCCCAAGATTATCGGGAGAAAGGGGGCAG
TAATTACCCAAATCCGGTTGGAGCATGACGTGAACATCCAGTTTCCTGATAAGGACGATGGGAACCAGCC
CCAGGACCAAATTACCATCACAGGGTACGAAAAGAACACAGAAGCTGCCAGGGATGCTATACTGAGAATT
GTGGGTGAACTTGAGCAGATGGTTTCTGAGGACGTCCCGCTGGACCACCGCGTTCACGCCCGCATCATTG
GTGCCCGCGGCAAAGCCATTCGCAAAATCATGGACGAATTCAAGGTGGACATTCGCTTCCCACAGAGCGG
AGCCCCAGACCCCAACTGCGTCACTGTGACGGGGCTCCCAGAGAATGTGGAGGAAGCCATCGACCACATC
CTCAATCTGGAGGAGGAATACCTAGCTGACGTGGTGGACAGTGAGGCGCTGCAGGTATACATGAAACCCC
CAGCACACGAAGAGGCCAAGGCACCTTCCAGAGGCTTTGTGGTGCGGGACGCACCCTGGACCGCCAGCAG
CAGTGAGAAGGCTCCTGACATGAGCAGCTCTGAGGAATTTCCCAGCTTTGGGGCTCAGGTGGCTCCCAAG
ACCCTCCCTTGGGGCCCCAAACGATAA

Translation (1268 aa):
MSSVAVLTQESFAEHRSGLVPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRP
IKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMKAR
KDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARH
EVLLISAEQDKRAVERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPSVNRTEIVFTGEKEQLAQA
VARIKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSDSISETVILRGEPEKL
GQALTEVYAKANSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEGEDKITLEGPTEDVNVA
QEQIEGMVKDLINRMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGV
QQAKRELLELASRMENERTKDLIIEQRFHRTIIGQKGERIREIRDKFPEVIINFPDPAQKSDIVQLRGPK
NEVEKCTKYMQKMVADLVENSYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIIT
GKRANCEAARSRILSIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTV
VIRGPSSDVEKAKKQLLHLAEEKQTKSFTVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAEDKD
QDLITIIGKEDAVREAQKELEALIQNLDNVVEDSMLVDPKHHRHFVIRRGQVLREIAEEYGGVMVSFPRS
GTQSDKVTLKGAKDCVEAAKKRIQEIIEDLEAQVTLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFP
DREENAVHSTEPVVQENGDEAGEGREAKDCDPGSPRRCDIIIISGRKEKCEAAKEALEALVPVTIEVEVP
FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRAL
RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRI
VGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHI
LNLEEEYLADVVDSEALQVYMKPPAHEEAKAPSRGFVVRDAPWTASSSEKAPDMSSSEEFPSFGAQVAPK
TLPWGPKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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