NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25424.1 Public Mus musculus 11 Klhl11 23 108 98 CCDS HistoryNCBI Gene:217194Re-query CCDS DB by CCDS ID:25424.1Re-query CCDS DB by GeneID:217194See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056665.3 ENSMUSP00000054963.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056665.3Link to Ensembl Protein Viewer:ENSMUSP00000054963.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056665Re-query CCDS DB by Protein ID:ENSMUSP00000054963
Original member Current member NCBI NM_172565.2 NP_766153.1 Accepted alive Link to Nucleotide Sequence:NM_172565.2Link to Protein Sequence:NP_766153.1Re-query CCDS DB by Nucleotide ID:NM_172565Re-query CCDS DB by Protein ID:NP_766153Link to BLAST:NP_766153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766153.1 709 Q8CE33-1 709 100% 0 0

Chromosomal Locations for CCDS 25424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100462864 100464445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100472181 100472728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGCGGCGGCTGTGGCGGCGGCAGCTGCCGCTGCGGCCGCGGCTGCATCTTTTCAAGTGCTGGAGATGG
AGAGCATGGAGACTGCCGTCGCCGGTTCCGCGAGCCTGGCCGCTGAGGTCCGAGGCAGTGGCACGGTAGA
CTTCGTGACCGGGGCCGGCATCTCTACCCTCGTCGACACGGGCGGGAGCGATCCGGGCCCAGAGGCCGAG
GACTTCGAGTGCAGCACTCACTGCTCCGAGTTGTCCTGGCGGCAGAACGAGCAGCGGCGTCAAGGCCTGT
TCTGCGACATCACCCTGTGCTTCGGCGGGGCCGGAGGTCGCGAGTTCCGTGCCCACCGCTCGGTGCTGGC
CGCTGCCACCGAGTACTTCACGCCCTTACTCTCGGGTCAGTTTTCGGAATCGCGCTCGGGCCGGGTGGAG
ATGCGCAAGTGGAGCTCAGAGCCCGGACCCGAACCTGACACGGTGGAAGCCGTTATCGAGTACATGTACA
CCGGCCGCATCCGAGTGAGCACCGGCAGCGTGCACGAGGTGCTGGAGCTGGCCGACAGATTCTTATTAAT
TCGTTTAAAAGAATTCTGTGGAGAATTTCTCAAGAAAAAACTTCATCTCTCGAATTGTGTGGCCATTCAT
AGCTTAGCCCACATGTATACCCTGAGCCAGCTTGCTCTGAAAGCTGCAGATATGATACGGAGAAATTTCT
ATAAAGTCATTCAGGATGAGGAATTTTACACTTTACCTTTCCATCTCATTCGGGACTGGCTTTCGGACTT
GGAAATCACTGTGGATTCTGAAGAGGTTCTTTTTGAAACAGTTTTGAAGTGGGTTCAGAGAAATGCAGAA
GAGAGAGAGAGATACTTTGAAGAGCTTTTTAAATTGCTCAGATTGTCCCAGATGAAACCCACCTACCTTA
CACGGCATGTCAAACCAGAGCGGCTAGTGGCCAATAATGAAGTTTGTGTCAAGCTGGTGGCAGAAGCAGT
GGAGAGGCATGCGCTCAGAGCAGAGAATATACAGTCTGGCACATTGCAGCAGCCCACTTCACAAGTCTCA
CTGTTACCTCGCTATGGACAAAACATGGACGTAATCATGGTTATCGGAGGAGTGTCGGAAGGAGGAGACT
ACTTAAGTGAATGTGTGGGATATTTTGTTGATGAGGATAGGTGGGTCAATCTGCCCCACATTCATAACCA
CCTTGATGGACATGCCGTCGCAATTACAGAGTCCTACGTGTATGTTGCTGGCTCCATGGAACCAGGGTTT
GCTAAAACTGTGGAAAGATACAACCCAAACCTGAATACATGGGAACATGTTTGTAGTCTGATGACCAGAA
AGCACTCTTTTGGGCTAACAGAAGTCAAAGGGAAGCTGTATAGCATTGGAGGACACGGCAATTTTAGCCC
TGGCTTTAAAGACGTGACTGTTTACAATCCCGAGCTTGATAAATGGCACAACTTAGAGTCAGCACCAAAG
ATTCTGCGAGATGTCAAAGCATTAGCCATTGAGGACCGGTTTGTGTACATTGCTGCCCGCACGCCCGTGG
ACCGGGACACTGAGGATGGACTGAAGGCTGTAATTACTTGCTATGATACAGAGACTCGACAGTGGCAAGA
TGTGGAATCTTTACCGCTTATTGACAATTACTGTTTTTTCCAGATGTCTGTGGTCAATTCAAACTTTTAT
CAGACAGCATCATGCTGTCCCAAGAGTTACTCCTTAGAAAATGAAGAAGCAGTAAGAAAAATTGCCGGTC
AGGTGTCTGATGAGATCCTTGAAAGCTTGCCTCCAGAAGTCCTAAGCATCGAAGGAGCAGCCATTTGCTA
TTACAGAGATGATGTCTTCATTATTGGAGGCTGGAAAAACAGTGATGATATTGACAAACAGTACAGGAAA
GAGGCCTACCGATACTGTGCTGAGAGAAAGAGGTGGATGCTCCTTCCTCCAATGCCTCAGCCCCGCTGCA
GGGCCACTGCTTGCCATGTCAGGATCCCTTACCGGTACTTACATGGCACACAGAGATACCCCATGCCTCA
AAATTTAATGTGGCAGAAGGACCGCATCCGACAGATGCAAGAGATACATCGGCACGCCCTGAACATGCGG
AGAGTGCCAAGTTCCCAGATTGAATGCTGA

Translation (709 aa):
MAAAVAAAAAAAAAAASFQVLEMESMETAVAGSASLAAEVRGSGTVDFVTGAGISTLVDTGGSDPGPEAE
DFECSTHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVE
MRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH
SLAHMYTLSQLALKAADMIRRNFYKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAE
ERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVAEAVERHALRAENIQSGTLQQPTSQVS
LLPRYGQNMDVIMVIGGVSEGGDYLSECVGYFVDEDRWVNLPHIHNHLDGHAVAITESYVYVAGSMEPGF
AKTVERYNPNLNTWEHVCSLMTRKHSFGLTEVKGKLYSIGGHGNFSPGFKDVTVYNPELDKWHNLESAPK
ILRDVKALAIEDRFVYIAARTPVDRDTEDGLKAVITCYDTETRQWQDVESLPLIDNYCFFQMSVVNSNFY
QTASCCPKSYSLENEEAVRKIAGQVSDEILESLPPEVLSIEGAAICYYRDDVFIIGGWKNSDDIDKQYRK
EAYRYCAERKRWMLLPPMPQPRCRATACHVRIPYRYLHGTQRYPMPQNLMWQKDRIRQMQEIHRHALNMR
RVPSSQIEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH