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Report for CCDS25152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25152.1 Public Mus musculus 11 Nle1 23 108 98 CCDS HistoryNCBI Gene:217011Re-query CCDS DB by CCDS ID:25152.1Re-query CCDS DB by GeneID:217011See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103213.9 ENSMUSP00000099502.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103213.9Link to Ensembl Protein Viewer:ENSMUSP00000099502.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103213Re-query CCDS DB by Protein ID:ENSMUSP00000099502
Original member Current member NCBI NM_145431.2 NP_663406.2 Accepted alive Link to Nucleotide Sequence:NM_145431.2Link to Protein Sequence:NP_663406.2Re-query CCDS DB by Nucleotide ID:NM_145431Re-query CCDS DB by Protein ID:NP_663406Link to BLAST:NP_663406.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663406.2 485 Q8VEJ4 485 100% 0 0

Chromosomal Locations for CCDS 25152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 82901038 82901050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82901557 82901627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82901709 82901868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82902995 82903197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82904090 82904136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82904240 82904375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82904792 82904984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82905278 82905375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82905507 82905583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82906425 82906504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82907553 82907770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82908092 82908235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 82908339 82908356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCGGCGGCGGTGGTGGAAGAGGCGGCGGCAGGCGACGTGCAGCGGCTGCTCGTACAGTTCCAGGATG
AGGGCGGTCAGCTGCTGGGCTCCCCGTTCGACGTGCCAGTGGACATCACGCCGGACAAGCTGCAGCTGGT
GTGCAACGCGCTGCTGGCCCAGGAGGAGCCCCTGCCCCTGGCGTTCTACGTCCACGATGCTGAGATTGTG
TCCTCCCTGGGGAAGACGCTGGAGTCCCAGTCTGTGGAGACAGAGAAAATCGTCGATATCATCTACCAGC
CCCAAGCTGTCTTCAGGGTCCGGGCTGTGACGCGGTGCACCAGCTCATTGGAGGGTCACAGCGAAGCTGT
CATTTCTGTGGCCTTCAGCCCCACAGGAAAGTACCTGGCCAGTGGTTCCGGAGACACCACTGTGCGCTTC
TGGGATCTCAGCACTGAGACACCGCACTTCACATGCAAAGGACACCGGCACTGGGTCCTTAGCATATCCT
GGTCCCCAGATGGCAAGAAACTGGCCTCAGGCTGCAAGAATGGCCAGGTTCTGCTGTGGGACCCAAGCAC
GGGGCTGCAGGTGGGCAGGACCCTCACTGGCCACAGCAAATGGATCACAGGCCTGAGCTGGGAGCCCCTT
CACATGAACCCCGAGTGCCGCTACGTGGCCAGCAGCTCCAAAGACGGCAGTGTACGAGTCTGGGATACAA
CCGCAGGCCGCTGTGAACGCATCCTCACGGGACACACGCAGTCAGTCACCTGCCTCCGATGGGGAGGAGA
TGGGCTTCTATATTCTGCTTCCCAGGACCGAACCATCAAAGTCTGGAGGGCCCATGACGGTGTGCTGTGT
CGTACTCTTCAAGGTCATGGCCACTGGGTGAACACTATGGCACTTAGCACAGACTATGCCCTGCGCACAG
GGGCCTTTGAGCCTGCTGAAGCCACAGTGAATGCCCAAGACCTGCAGGGGTCCTTGAAGGAGCTGAAGGA
GAGGGCATCGAGCCGCTACAACCTTGTGCGGGGCCAAGGCCCAGAGAGGCTGGTCTCTGGCTCAGACGAC
TTCACCTTATTCCTGTGGTCCCCAGCAGAGGACAAGAAGCCCCTCGCCCGGATGACAGGACACCAGGCCC
TCATCAACCAGGTGCTCTTCTCTCCTGACTCGCGCATCGTGGCCAGTGCCTCCTTCGACAAGTCTATCAA
GCTGTGGGATGGCCGGACGGGCAAGTACCTAGCTTCCCTGCGTGGCCACGTGGCGGCCGTGTACCAGATT
GCCTGGTCAGCTGACAGCCGACTATTAGTCAGCGGCAGCAGTGACAGCACGCTGAAGGTGTGGGATGTGA
AGGCCCAGAAACTGGCCACGGACCTGCCTGGCCATGCCGATGAGGTATATGCTGTTGACTGGAGTCCAGA
TGGCCAGAGAGTAGCAAGCGGCGGGAAAGACAAGTGCCTCCGGATATGGAGAAGATGA

Translation (485 aa):
MAAAVVEEAAAGDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIV
SSLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRF
WDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKWITGLSWEPL
HMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLC
RTLQGHGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDD
FTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQI
AWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIWRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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