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Report for CCDS25092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25092.1 Public Mus musculus 11 Tlcd1 23 108 98 CCDS HistoryNCBI Gene:68385Re-query CCDS DB by CCDS ID:25092.1Re-query CCDS DB by GeneID:68385See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127587.7 ENSMUSP00000114202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127587.7Link to Ensembl Protein Viewer:ENSMUSP00000114202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127587Re-query CCDS DB by Protein ID:ENSMUSP00000114202
Original member Current member NCBI NM_026708.2 NP_080984.1 Accepted alive Link to Nucleotide Sequence:NM_026708.2Link to Protein Sequence:NP_080984.1Re-query CCDS DB by Nucleotide ID:NM_026708Re-query CCDS DB by Protein ID:NP_080984Link to BLAST:NP_080984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080984.1 247 Q99JT6-1 247 100% 0 0

Chromosomal Locations for CCDS 25092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78178863 78179056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78179370 78179452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78179540 78179622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78179947 78180330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCCCCTACTGTTCCACCCCGCCTGGCCGCTGCTCCTGGGCGCCACGCTGACCTTCCGGGCACTCCGGC
GCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGACCCCCTGCGCACCTGGCGTTGGCACAA
CCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGGGCACTGCTGTGCTTATGGCAAACCCCT
GAAATGCTGGTGGAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTGCTTGTTTGCTTCTCTGCAGGAT
ACTTTATCCACGACACAGTGGACATTGTGGTTAGCAAGCAAACTCGAGCTTCTTGGGAATACCTTGTTCA
TCATGTCATGGCTATGGGCGCCTTCTTCTCTGGTATCTTTTGGAAAAGATTTGTTGGTGGTGGCGTCTTA
ACACTACTGGTAGAGGTCAGCAACATCTTCCTCACCTTAAGGATGATGATGAAGATAAACAATGCTCAGG
ATCTCCTCCTCTACAAGGTCAACAAGTATATCAACTTGGTCATGTACTTCCTCTTCCGATTGGCCCCTCA
GGCCTACCTCACCAAGTTCTTCCTACAGTATGCTGGCCAGAGGACCCTGGGCACATTCTTGTTGGCCATC
CTGCTCATGCTGGACTTGATGATAATCATCTACTTTTCTCGCCTCCTCCGCTCTGATTTCTGCCCTGAAC
GTGCACCCAGGCGCCAACAAAAAGACAAATTCTTGACTGAGTGA

Translation (247 aa):
MPLLFHPAWPLLLGATLTFRALRRVLCRLPQPAHVQTDPLRTWRWHNLLVSFTHSIVSGIWALLCLWQTP
EMLVEIETAWSASGYLLVCFSAGYFIHDTVDIVVSKQTRASWEYLVHHVMAMGAFFSGIFWKRFVGGGVL
TLLVEVSNIFLTLRMMMKINNAQDLLLYKVNKYINLVMYFLFRLAPQAYLTKFFLQYAGQRTLGTFLLAI
LLMLDLMIIIYFSRLLRSDFCPERAPRRQQKDKFLTE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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