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Report for CCDS25071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25071.1 Public Mus musculus 11 Cpd 23 108 98 CCDS HistoryNCBI Gene:12874Re-query CCDS DB by CCDS ID:25071.1Re-query CCDS DB by GeneID:12874See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021201.5 ENSMUSP00000021201.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021201.5Link to Ensembl Protein Viewer:ENSMUSP00000021201.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021201Re-query CCDS DB by Protein ID:ENSMUSP00000021201
Original member Current member NCBI NM_007754.2 NP_031780.2 Accepted alive Link to Nucleotide Sequence:NM_007754.2Link to Protein Sequence:NP_031780.2Re-query CCDS DB by Nucleotide ID:NM_007754Re-query CCDS DB by Protein ID:NP_031780Link to BLAST:NP_031780.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031780.2 1377 O89001 1377 100% 0 0

Chromosomal Locations for CCDS 25071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 76782184 76782410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76784387 76784486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76785019 76785204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76786271 76786402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76790827 76790891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76790995 76791090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76791864 76791995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76792736 76792871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76795441 76795636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76797581 76797904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76799789 76799958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76801640 76801782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76802232 76802334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76805976 76806085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76808710 76808877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76811695 76811886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76812382 76812731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76813483 76813652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76814771 76814913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76840388 76840635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 76846224 76846966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4134 nt):
ATGGCGAGCGGCCGGGATGAGCGGCCGCCCTGGCGGCTGGGACGCCTGCGTCTGCTGCCGCCGCCACCGC
TGCTGCTGCTGCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCAC
GACAACCGTTGGCGGCTCCGAGGCGGCCGAGGGCCAGTTTGACCACTACTACCACGAAGCGGCGCTGGGC
GAGGCGCTGGAAGCGGCGGCGGCCGCGGGGCCACCCGGCCTGGCGCGTCTCTTCAGCATCGGCAGCTCGG
TGGAGGGCCGGCCGCTGTGGGTGCTGCGCCTCACAGCGGGCCTGGGGCCGCCGCCCACCGCCGCCGCGGG
GCTGGACGCCGCGGGGCCGCTGCTGCCCGGCCGGCCGCAGGTGAAGCTGGTGGGTAACATGCACGGCGAC
GAGACGGTGTCACGCCAGGTGTTGGTCTACCTGGCCCGCGAGCTGGCGTCGGGCTACCGCCGCGGGGACC
CGCGCCTGGTCCGCCTGCTCAACACCACCGACGTGTATTTGCTGCCCAGCCTGAACCCGGATGGCTTCGA
ACGTGCCCGCGAGGGTGACTGCGGCCTCGGCGACAGCGGCCCGCCTGGGACCAGCGGCCGTGACAACAGC
CGAGGCCGCGACCTCAACCGCAGCTTCCCTGACCAGTTCAGCACCGGCGAGCCACCTTCCCTGGATGAGG
TGCCGGAGGTGCGCGCCCTCATCGACTGGATCCGCAGGAACAAGTTTGTGCTTTCTGGAAATCTTCATGG
TGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATTCTCCCGAGCATAAGACCACTGGACTCTATAGCAAA
ACCTCCGATGATGAAGTCTTTAGATACTTGGCAAAAGCTTATGCCTCTAACCACCCTATAATGAAAACTG
GCGAACCCCATTGTCCAGGAGATGAAGACGAGACTTTCAAAGATGGGATCACGAATGGCGCGCACTGGTA
TGACGTGGAAGGTGGTATGCAAGATTACAATTATGTATGGGCCAACTGTTTTGAGATCACATTAGAATTG
TCTTGCTGCAAGTACCCACCTGCTTCTCAGCTTCGACAAGAATGGGAGAATAATCGTGAGTCTTTGATCA
CATTGATTGAAAAGGTCCACATTGGAATTAAAGGATTTGTTAAAGATTCCGTAACAGGCTCTGGGTTAGA
GAACGCAACCATTTCAGTGGCTGGTATTAATCATAACATCACAACGGGAAGATTTGGTGATTTCCACAGA
TTACTTGTTCCTGGAACTTACAATCTTACGGCGCTTTCAACTGGGTATATGCCATTGACCATTAATAATA
TAATGGTGAAAGAAGGGCCAGCTACAGAGATGGATTTCTCCCTTCGGCCAACTGTGATGTCAGTAATGCC
TGGTTCAACTGAGGCTGTAACAACTCCTGGCACAGTTGCTGTTCCTAATATCCCTCCTGGAACACCATCC
TCCCATCAGCCAATTCAGCCTAAAGACTTTCACCACCACCATTTTCCCGACATGGAAATCTTCTTGAGAA
GATTTGCCAATGAATATCCTAATATCACCCGTCTTTATTCTCTGGGGAAATCCGTAGAGTCAAGAGAACT
GTATGTGATGGAGATATCTGATAACCCAGGTGTCCATGAACCAGGTGAACCAGAATTTAAGTATATTGGA
AATATGCATGGAAATGAAGTGGTTGGAAGAGAGCTGCTATTGAATCTCATTGAATACCTCTGCAAGAATT
TTGGAACAGACCCTGAAGTAACAGATTTGGTTCGCAGCACAAGAATTCACCTTATGCCATCCATGAATCC
TGATGGATATGAAAAGTCCCAGGAAGGAGATTCGATCAGTGTAGTTGGCAGAAACAACAGCAACAACTTT
GACCTAAACCGGAATTTCCCAGACCAGTTTGTTCCAATCACAGAACCTACCCAACCAGAAACTATCGCTG
TGATGAGCTGGGTGAAGGCCTACCCGTTTGTGCTGTCAGCCAATCTGCACGGGGGTTCCCTGGTGGTTAA
CTACCCTTATGATGATAATGAGCAAGGAGTTGCCACGTACAGCAAGTCACCAGATGATGCTGTATTTCAG
CAAATAGCACTTTCTTATTCCAAGGAAAATTCGCAGATGTTCCAAGGTAGACCTTGCAAGGACATGTATC
TCAATGAGTATTTTCCTCATGGGATAACAAACGGAGCTAGTTGGTATAACGTCCCAGGTGGTATGCAGGA
CTGGAACTATTTACAGACAAATTGCTTTGAAGTAACTATCGAACTCGGTTGTGTGAAATATCCATTTGAG
AATGAACTGCCAAAGTACTGGGAGCAAAATCGAAGATCTCTAATCCAGTTTATGAAACAGGTTCATCAGG
GTGTCAAAGGATTTGTCCTTGATGCCACAGATGGTAGGGGCATATTAAATGCCACCCTCAGTGTTGCTGA
AATTAATCACCCAGTGACCACTTACAAAGCTGGAGATTACTGGCGCCTCTTGGTCCCAGGGACATACAAA
ATCACAGCATCTGCCCGAGGGTATAACCCTGTCACCAAGAACGTGACCGTCAGGAGTGAAGGTGCTGTTC
AGGTCAACTTCACCCTTGTTCGATCTTCAGCAGATGCAAACAATGAGTCAAAGAAAGGCAGGGGGCATAG
CACCAGCACTGACGACACCAGCGACCCAACTTCTAAGGAGTTTGAAGCATTAATCAAACACCTTTCGGCT
GAGAATGGCTTGGAAGGCTTCATGTTAAGCTCGTCCTCAGACCTGGCTCTGTATCGATACCATTCATACA
AAGACTTATCCGAGTTCCTGAGAGGACTTGTAATGAACTACCCGCACATTACAAACCTTACCACTTTGGG
ACAGAGTGTTGAGTATCGTCACATTTGGTCCCTGGAGATCTCCAATAAGCCCAACATATCAGAACCTGAA
GAACCGAAGATTCGTTTTGTTGCTGGTATCCATGGAAACGCTCCAGTTGGAACTGAACTGCTCTTGGCTC
TGGCAGAATTTCTTTGCCTGAATTACAAAAGGAACCCAGTTGTTACCCAATTGGTTGACAGGACTAGAAT
TGTGATTGTTCCCTCTCTGAATCCAGATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCACCTCAAAGACT
GGGCACACAAATGCTCATGGCAAAGACCTGGACACAGACTTTACAAGTAATGCTTCTCAGCCTGAGACCA
AAGCCATCATCGAAAACTTGATTCAAAAGCAGGACTTCAGTCTTTCCATTGCCTTAGATGGTGGTTCTGT
GCTGGTCACATATCCGTATGATAAACCAGTGCAGACAGTGGAAAACAAAGAAACTTTAAAGCATTTGGCA
TCTCTTTATGCAAATAACCATCCATCAATGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGA
ACATACCTGGAGGAGTGATGCGGGGAGCCGAGTGGCACAGTCACCTGGGCAGCATGAAGGATTATAGTGT
CACCTATGGCCATTGCCCAGAAATCACGGTATACACAAGCTGCTGCTACTTCCCAAGTGCAGCTCAGCTC
CCTGCCCTATGGGCAGAGAACAAGAAGTCTCTCCTTAGCATGCTGGTGGAGGTCCACAAAGGAGTCCACG
GGTTAGTAAAAGACAAGGCTGGTAAACCAATCTCGAAAGCAGTCATTGTACTCAATGAAGGAATAAAAGT
ATACACAAAGGAGGGGGGTTATTTCCATGTGCTCCTAGCTCCTGGAGTCCATAACATCAACGCAATTGCT
GATGGGTACCAGCAGCAGCACACACAGGTCTTTGTGCATCATGATGCAGCCAGTTCTGTGGTAATAGTCT
TTGATACAGATAACCGGATATTTGGTTTGCCAAGGGAACTCGTGGTAACTGTGTCAGGTGCCACTATGTC
AGCACTGATCCTAACGGCTTGCATCATTTGGTGCATCTGCTCCATCAAGTCTAATAGACACAAAGATGGC
TTCCACCGGCTGCGGCAGCATCATGATGAATATGAAGATGAAATTCGCATGATGTCAACTGGCTCTAAGA
AGTCCCTCCTAAGCCATGAGTTCCAGGATGAAACGGACACAGAGGAGGAAACATTATATTCTAGCAAACA
TTGA

Translation (1377 aa):
MASGRDERPPWRLGRLRLLPPPPLLLLLLLLRSSAQAAHIKKAEATTTTVGGSEAAEGQFDHYYHEAALG
EALEAAAAAGPPGLARLFSIGSSVEGRPLWVLRLTAGLGPPPTAAAGLDAAGPLLPGRPQVKLVGNMHGD
ETVSRQVLVYLARELASGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGLGDSGPPGTSGRDNS
RGRDLNRSFPDQFSTGEPPSLDEVPEVRALIDWIRRNKFVLSGNLHGGSVVASYPFDDSPEHKTTGLYSK
TSDDEVFRYLAKAYASNHPIMKTGEPHCPGDEDETFKDGITNGAHWYDVEGGMQDYNYVWANCFEITLEL
SCCKYPPASQLRQEWENNRESLITLIEKVHIGIKGFVKDSVTGSGLENATISVAGINHNITTGRFGDFHR
LLVPGTYNLTALSTGYMPLTINNIMVKEGPATEMDFSLRPTVMSVMPGSTEAVTTPGTVAVPNIPPGTPS
SHQPIQPKDFHHHHFPDMEIFLRRFANEYPNITRLYSLGKSVESRELYVMEISDNPGVHEPGEPEFKYIG
NMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVRSTRIHLMPSMNPDGYEKSQEGDSISVVGRNNSNNF
DLNRNFPDQFVPITEPTQPETIAVMSWVKAYPFVLSANLHGGSLVVNYPYDDNEQGVATYSKSPDDAVFQ
QIALSYSKENSQMFQGRPCKDMYLNEYFPHGITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPFE
NELPKYWEQNRRSLIQFMKQVHQGVKGFVLDATDGRGILNATLSVAEINHPVTTYKAGDYWRLLVPGTYK
ITASARGYNPVTKNVTVRSEGAVQVNFTLVRSSADANNESKKGRGHSTSTDDTSDPTSKEFEALIKHLSA
ENGLEGFMLSSSSDLALYRYHSYKDLSEFLRGLVMNYPHITNLTTLGQSVEYRHIWSLEISNKPNISEPE
EPKIRFVAGIHGNAPVGTELLLALAEFLCLNYKRNPVVTQLVDRTRIVIVPSLNPDGRERAQEKDCTSKT
GHTNAHGKDLDTDFTSNASQPETKAIIENLIQKQDFSLSIALDGGSVLVTYPYDKPVQTVENKETLKHLA
SLYANNHPSMHMGQPSCPNNSDENIPGGVMRGAEWHSHLGSMKDYSVTYGHCPEITVYTSCCYFPSAAQL
PALWAENKKSLLSMLVEVHKGVHGLVKDKAGKPISKAVIVLNEGIKVYTKEGGYFHVLLAPGVHNINAIA
DGYQQQHTQVFVHHDAASSVVIVFDTDNRIFGLPRELVVTVSGATMSALILTACIIWCICSIKSNRHKDG
FHRLRQHHDEYEDEIRMMSTGSKKSLLSHEFQDETDTEEETLYSSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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