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Report for CCDS24572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24572.1 Public Mus musculus 11 Nipal4 23 108 98 CCDS HistoryNCBI Gene:214112Re-query CCDS DB by CCDS ID:24572.1Re-query CCDS DB by GeneID:214112See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020679.2 ENSMUSP00000020679.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020679.2Link to Ensembl Protein Viewer:ENSMUSP00000020679.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000020679Re-query CCDS DB by Protein ID:ENSMUSP00000020679
Original member Current member NCBI NM_172524.3 NP_766112.1 Accepted alive Link to Nucleotide Sequence:NM_172524.3Link to Protein Sequence:NP_766112.1Re-query CCDS DB by Nucleotide ID:NM_172524Re-query CCDS DB by Protein ID:NP_766112Link to BLAST:NP_766112.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766112.1 406 Q8BZF2 406 100% 0 0

Chromosomal Locations for CCDS 24572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46150146 46150774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46151261 46151421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46154604 46154694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46156766 46156822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46161854 46162093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46166234 46166276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGAGCTGCGGGTCGCCAACGCCAATGGCAGCTGCGAGAACGGCTCCATAGTCAGCCTCTACTGCTCCT
CTCAGGAGGTCCTCTGTCAGATCGTGAGAGGCATCAGTCCTGAAGAGCCCTACAATGCCACCTTGATCAC
CTGGCAAGAGAGGGTCAGGAAGAAGTATGGCTTCTACATCGGTGTGGGCCTCGCCTTCCTCTCCTGCTTC
CTCATCGGCACCAGTGTCATCCTTAAGAAGAAAGGCCTCATTCGGCTTGTGGCCACAGGGGCCACAAGGG
CAGTGAATGGAGGCTACGGCTACCTGAAGGACCCAATGTGGTGGGCTGGAATGGCTACCATGTCTGCTGG
AGAAGTTGCCAACTTCGGGGCCTATGCATTTGCACCTGCGACGGTTGTCACACCGCTGGGAGCACTGAGC
GTCCTCATAAGTGCCATCTTTTCCTCCTACTGCCTGGGAGAGAGCCTGAATCTACTGGGGAAACTGGGCT
GTGTGATCTGTATGGCTGGCAGCACAGTGATGGTCATACATGCCCCCAAAGAGGAGAAGGTCACCACTGT
TGCAGAGATGGCTTCCAAGATGAAAGACACAGGGTTCATCGTCTTTGCTGTCCTTCTGGTGGTGTCTTGC
CTCATCCTCATCTTCATTGTTGCCCCACGTTACGGGCAAAGGAATATCCTCATTTACATCATCATCTGCT
CCGTGATCGGATCCTTCTCCGTGACTGCCGTCAAGGGGCTTGGTGTCACCATTAGGAACTTCTTCCAGGG
CTTACCAGTTGTGCGGCACCCTCTCCCTTACATCCTGTCCCTCATCCTGGGTCTTTCTATCATCATCCAG
GTCAACTTCCTCAACAGGGCACTGGATATTTTCAACACCTCATTGGTCTTCCCCATCTACTACGTTTTCT
TCACCACGGTGGTGGTGGCCTCCTCCATCGTCCTCTTCAAGGAGTGGTATACCATGTCTGCTGTGGACAT
TGTGGGCACCCTGTCTGGCTTCGTCACCATCATCCTGGGTGTTTTTATGCTTCACGCTTTCAAGGATTTG
GACATCAACCAAATCAGCTTGCCCCACACGCACAAAAACCCAACTCCAGCTCCCGCCCCAGAGCCCACAG
TCATTAAACTAGAAGACAAGAATGTCCTTGTAGATAACATAGAACTTGCCAGCACACCATCACCCCAACA
GAAGCCCAAAGTATTTATGACCGATTCTTAA

Translation (406 aa):
MELRVANANGSCENGSIVSLYCSSQEVLCQIVRGISPEEPYNATLITWQERVRKKYGFYIGVGLAFLSCF
LIGTSVILKKKGLIRLVATGATRAVNGGYGYLKDPMWWAGMATMSAGEVANFGAYAFAPATVVTPLGALS
VLISAIFSSYCLGESLNLLGKLGCVICMAGSTVMVIHAPKEEKVTTVAEMASKMKDTGFIVFAVLLVVSC
LILIFIVAPRYGQRNILIYIIICSVIGSFSVTAVKGLGVTIRNFFQGLPVVRHPLPYILSLILGLSIIIQ
VNFLNRALDIFNTSLVFPIYYVFFTTVVVASSIVLFKEWYTMSAVDIVGTLSGFVTIILGVFMLHAFKDL
DINQISLPHTHKNPTPAPAPEPTVIKLEDKNVLVDNIELASTPSPQQKPKVFMTDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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