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Report for CCDS24554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24554.1 Public Mus musculus 11 Gabra6 23 108 98 CCDS HistoryNCBI Gene:14399Re-query CCDS DB by CCDS ID:24554.1Re-query CCDS DB by GeneID:14399See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020703.12 ENSMUSP00000020703.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020703.12Link to Ensembl Protein Viewer:ENSMUSP00000020703.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020703Re-query CCDS DB by Protein ID:ENSMUSP00000020703
Original member Current member NCBI NM_008068.3 NP_032094.2 Accepted alive Link to Nucleotide Sequence:NM_008068.3Link to Protein Sequence:NP_032094.2Re-query CCDS DB by Nucleotide ID:NM_008068Re-query CCDS DB by Protein ID:NP_032094Link to BLAST:NP_032094.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032094.2 443 P16305-2 443 100% 0 0

Chromosomal Locations for CCDS 24554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 42307260 42307535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42314942 42315201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42316430 42316582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42316970 42317113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42317401 42317483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42317558 42317748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42319668 42319735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42320384 42320502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42320731 42320768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGTCTTGCTTCTCCCCTGGCTCTTCATTATTCTATGGCTAGAAAATGCCCAAGCTCAACTTGAAGATG
AAGGCAACTTCTACTCTGAAAATGTCAGTCGGATTCTTGACAACTTGCTGGAAGGCTATGACAACCGTCT
ACGGCCAGGATTTGGGGGTGCTGTAACAGAAGTCAAAACAGACATCTATGTGACCAGCTTTGGACCTGTG
TCAGATGTGGAGATGACTTGGACTGATGAGAGACTGAAATTTAAAGGCCCTGCTGAGATTCTGAGCTTAA
ATAACTTGATGGTCAGTAAGATCTGGACTCCTGACACTTTTTTCCGGAATGGGAAAAAGTCAATTGCTCA
CAACATGACCACCCCCAACAAGCTCTTCCGATTAATGCAGAATGGAACAATCCTCTATACCATGAGGCTC
ACCATCAACGCTGATTGCCCCATGAGATTGGTTAACTTCCCTATGGATGGACACGCTTGTCCACTCAAGT
TTGGGAGCTATGCTTATCCTAAAACTGAAATCATATATACATGGAAAAAAGGACCACTTTACTCAGTAGA
AGTCCCAGAAGAATCTTCTAGCCTCCTCCAGTATGATTTGATTGGGCAAACAGTTTCTAGTGAGACAATT
AAATCTAACACTGGTGAATATGTAATCATGACAGTCTATTTCCACTTACAAAGGAAGATGGGCTATTTCA
TGATCCAGATATACACTCCGTGCATCATGACAGTCATTCTTTCTCAAGTGTCTTTCTGGATTAATAAGGA
GTCAGTCCCAGCAAGAACTGTCTTTGGAATCACCACTGTTTTAACCATGACCACCTTAAGCATCAGTGCT
CGGCACTCTCTACCCAAAGTGTCCTATGCAACCGCCATGGATTGGTTCATAGCTGTATGCTTTGCTTTTG
TCTTTTCTGCTCTCATTGAATTCGCAGCTGTCAACTACTTCACCAATCTCCAGTCACAGAAGGCTGAAAG
GCAGGCACAAACTGCAGCCACGCCCCCTGTGGCAAAGTCAAAAGCGTCTGAATCCCTGCAAGCAGAGATT
GTTGTGCATTCTGACTCCAAGTACCATCTGAAGAAGAGAATCAGCTCTCTGACTTTGCCCATCGTTCCAT
CTTCTGAGGCCAGCAAAGCCCTCAGTAGAACGCCCATCTTAAAATCGACGCCTGTCTCTCCCCCATTGCT
CTTACCAGCCACTGGGGGCACCAGCAAAATAGATCAGTATTCTCGAATTCTCTTCCCAGTAGCTTTTGCA
GGATTCAACCTTGTGTACTGGATAGTTTACCTTTCCAAAGATACAATGGAAGTGAGCAGTACTGTTGAGT
AG

Translation (443 aa):
MVLLLPWLFIILWLENAQAQLEDEGNFYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGPV
SDVEMTWTDERLKFKGPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQNGTILYTMRL
TINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYTWKKGPLYSVEVPEESSSLLQYDLIGQTVSSETI
KSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISA
RHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQKAERQAQTAATPPVAKSKASESLQAEI
VVHSDSKYHLKKRISSLTLPIVPSSEASKALSRTPILKSTPVSPPLLLPATGGTSKIDQYSRILFPVAFA
GFNLVYWIVYLSKDTMEVSSTVE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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