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Report for CCDS24549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24549.1 Public Mus musculus 11 Nudcd2 23 108 98 CCDS HistoryNCBI Gene:52653Re-query CCDS DB by CCDS ID:24549.1Re-query CCDS DB by GeneID:52653See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020578.10 ENSMUSP00000020578.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020578.10Link to Ensembl Protein Viewer:ENSMUSP00000020578.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020578Re-query CCDS DB by Protein ID:ENSMUSP00000020578
Original member NCBI NM_026023.5 NP_080299.4 Updated not alive Link to Nucleotide Sequence:NM_026023.5Link to Protein Sequence:NP_080299.4Re-query CCDS DB by Nucleotide ID:NM_026023Re-query CCDS DB by Protein ID:NP_080299
Current member NCBI NM_026023.6 NP_080299.4 Accepted alive Link to Nucleotide Sequence:NM_026023.6Link to Protein Sequence:NP_080299.4Re-query CCDS DB by Nucleotide ID:NM_026023Re-query CCDS DB by Protein ID:NP_080299Link to BLAST:NP_080299.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080299.4 157 Q9CQ48 157 100% 0 0

Chromosomal Locations for CCDS 24549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 40733966 40734154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40736018 40736066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40736493 40736644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 40739159 40739242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (474 nt):
ATGTCCGCCCCGTTTGAGGAGCGCAGCGGGGTGGTTCCTTGCGGGACTCCGTGGGGACAGTGGTACCAGA
CCCTGGAGGAGGTGTTCATTGAAGTCCAGGTGCCCCCCGGCACTCGCGCGCAGGACATCCAGTGCGGCCT
GCAGAGTCGGCACGTGGCTCTGGCCGTGGGTGGCCGCGAGATCCTCAAGGGGAAACTGTTTGATTCTACA
ATTGCTGATGAAGGAACATGGACTTTGGAGGACAGAAAAATGGTCCGCATTGTCCTGACAAAAACCAAGA
GAGATGCAGCAAACTGTTGGACTTCTCTTTTAGAGTCTGAATATGCAGCTGACCCCTGGGTGCAAGACCA
AATGCAGAGAAAACTTACATTAGAGCGATTCCAGAAAGAAAATCCTGGTTTTGACTTTAGTGGAGCAGAA
ATCTCAGGGAACTACACGAAGGGCGGACCAGATTTCTCAAACCTTGAGAAATGA

Translation (157 aa):
MSAPFEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDST
IADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAE
ISGNYTKGGPDFSNLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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