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Report for CCDS24422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24422.1 Public Mus musculus 11 Ccm2 23 108 98 CCDS HistoryNCBI Gene:216527Re-query CCDS DB by CCDS ID:24422.1Re-query CCDS DB by GeneID:216527See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000388.14 ENSMUSP00000000388.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000388.14Link to Ensembl Protein Viewer:ENSMUSP00000000388.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000388Re-query CCDS DB by Protein ID:ENSMUSP00000000388
Original member Current member NCBI NM_146014.3 NP_666126.1 Accepted alive Link to Nucleotide Sequence:NM_146014.3Link to Protein Sequence:NP_666126.1Re-query CCDS DB by Nucleotide ID:NM_146014Re-query CCDS DB by Protein ID:NP_666126Link to BLAST:NP_666126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666126.1 453 Q8K2Y9-1 453 100% 0 0

Chromosomal Locations for CCDS 24422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6547000 6547029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6569964 6570137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6584520 6584603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6585034 6585217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6589432 6589568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6590753 6590888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6593067 6593124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6593602 6593740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6594148 6594286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 6596081 6596361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGAGGAGGAGGGCAAGAAGGGCAAGAAGCCTGGAATTGTGTCGCCATTTAAACGAGTATTCCTAAAAG
GTGAAAAGAGTAGAGATAAGAAAGCCCATGAGAAGGTGACAGAGAGGCGCCCTCTGCACACTGTGGTGCT
GGCGTTACCTGAGCGCGTCGAGCCAGACAGACTGCTGAGCGACTATATTGAGAAGGAGGTGAAGTATTTA
GGTCAGTTAACATCCATTCCCGGCTACCTGAACCCTTCCAGTAGGACGGAAATCCTGCATTTCATAGACA
AGGCAAAGCGGTCCCACCAGCTTCCTGGGCACCTGACTCAGGAGCACGATGCTGTGCTCAGTCTGTCTGC
CTACAATGTCAAGTTGGCCTGGAGGGACGGGGAGGACATTATCCTCAGGGTGCCCATCCATGATATCGCT
GCTGTCTCCTATGTCCGAGATGATGCTGCACACCTGGTGGTCCTGAAGACAGCCCAGGACCCAGGCATCT
CTCCCAGCCAGAGTCTGTGTGCAGAAAGTTCTAGAGGCCTCAGCGCAGGTTCCTTGTCAGAAAGTGCAGT
GGGGCCAGTAGAGGCATGTTGCCTGGTCATCATGGCCACAGAGAGCAAGGTCGCCGCTGAAGAGTTGTGC
TCCCTGCTCAGCCAGGTCTTCCAGATTGTTTACACGGAGTCCACCATCGACTTTCTGGACCGAGCAATAT
TTGATGGGGCTTCCACACCTACCCACCACCTGTCGCTGCACAGTGATGACTCTTCCACGAAAGTGGACAT
GAAGGACAGTTACGATGCTGACGCCAGCACCTTCTGCTTCCCGGACTCTGGGGATGTGGGAGGCCTGCCG
CCCTTACCCTTCTGCATGCAGACATCACCCCATAGCAAGACTGTCAGTGAGAGCGAGCTGAGCACCAGCG
CCACGGAACTGCTGCAGGACTACATGCTCACGTTACGTACGAAGCTGTCATCACAGGAGATCCAGCAGTT
CGCAGCTCTGCTACATGAGTACCGCAATGGGGCCTCTATCCATGAGTTTTGCATCAGCCTGCGGCAGCTC
TATGGGGACAGCCGCAAGTTCCTGCTACTTGGTCTCAGACCCTTCATACCTGAGAAGGACAGTCAGCACT
TTGAAAACTTCCTGGAGACCATTGGCGTGAAAGACGGCCGTGGCATCATCACTGACAGCTTTGGTAGGCA
TCGTCGTGCCCTGAGTACCACCTCCACATCCACCATCAATGGGAACAGGACCACAGGCAGCCCTGATGAC
CGCTCTGCGCCCTCAGAGGGGGATGAGTGGGACCGCATGATTTCAGACATCAGTAGTGATATTGAAGCGC
TAGGCTGCAGCATGGACCAGGACTCAGCGTGA

Translation (453 aa):
MEEEGKKGKKPGIVSPFKRVFLKGEKSRDKKAHEKVTERRPLHTVVLALPERVEPDRLLSDYIEKEVKYL
GQLTSIPGYLNPSSRTEILHFIDKAKRSHQLPGHLTQEHDAVLSLSAYNVKLAWRDGEDIILRVPIHDIA
AVSYVRDDAAHLVVLKTAQDPGISPSQSLCAESSRGLSAGSLSESAVGPVEACCLVIMATESKVAAEELC
SLLSQVFQIVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVDMKDSYDADASTFCFPDSGDVGGLP
PLPFCMQTSPHSKTVSESELSTSATELLQDYMLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCISLRQL
YGDSRKFLLLGLRPFIPEKDSQHFENFLETIGVKDGRGIITDSFGRHRRALSTTSTSTINGNRTTGSPDD
RSAPSEGDEWDRMISDISSDIEALGCSMDQDSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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