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Report for CCDS24292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24292.1 Public Mus musculus 10 Mmp19 23 108 98 CCDS HistoryNCBI Gene:58223Re-query CCDS DB by CCDS ID:24292.1Re-query CCDS DB by GeneID:58223See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026411.7 ENSMUSP00000026411.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026411.7Link to Ensembl Protein Viewer:ENSMUSP00000026411.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026411Re-query CCDS DB by Protein ID:ENSMUSP00000026411
Original member Current member NCBI NM_021412.3 NP_067387.1 Accepted alive Link to Nucleotide Sequence:NM_021412.3Link to Protein Sequence:NP_067387.1Re-query CCDS DB by Nucleotide ID:NM_021412Re-query CCDS DB by Protein ID:NP_067387Link to BLAST:NP_067387.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067387.1 527 Q9JHI0 527 100% 0 0

Chromosomal Locations for CCDS 24292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128791055 128791144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128791585 128791670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128794526 128794656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128794820 128795035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128795560 128795805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128796389 128796514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128798127 128798291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128798436 128798563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128798705 128799100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGACTGGCAGCAGCTGTGGCTGGCATTCTTACTTCCCATGACAGTCTCAGGCCGGGCTCTGGGGCCTA
CAGAGAAGGAGGCAGTCTTGGATTACCTGTTGCAGTATGGGTATCTACAGAAACCTCTAGAAGGAGCTGA
TGACTTCAGGCTGGAAGATATCACAGAGGCTTTAAGAACTTTCCAGGAAGCATCTGGACTGCCCATTTCC
GGTCAGATGGATGACGCCACAAGGGCCCGTATGAAGCAGCCCCGTTGTGGTCTGGAGGATCCCTTCAACC
AGAAATCTCTTAAATACCTGCTTCTGGGCCACTGGAGAAAGAAGAACTTGACATTCCGCATCTTCAATGT
GCCCTCCACCCTCTCACTTCCCAGAGTCCGAGCAGCCCTGCATCAAGCCTTTAAGTACTGGAGCAGCGTG
GCTCCTCTGACCTTCCGGGAGGTGAAAGCTGGTTGGGCTGACATTCGCCTCTCTTTCCATGGCCGCCAAA
GCCTGTACTGCTCCAATACCTTTGATGGGCCTGGAAAGGTCCTGGCCCATGCTGACATCCCAGAACTTGG
GAGTATACACTTTGATAAAGATGAACTCTGGACTGAGGGGACCTATCAAGGAGTGAACCTGCGCATCATT
GCGGCCCATGAAGTGGGCCATGCCCTAGGACTTGGGCACTCCCGATATACCCAGGCACTCATGGCTCCTG
TCTATGCTGGCTACCAGCCCTTCTTCAAGCTGCATCCAGATGATGTGGCAGGGATCCAGGCTCTCTATGG
CAAGAGGAGCCCAGAGACAAGAGATGAGGAGGAAGAGACCGAGATGCTCACTGTGTCTCCAGTGACTGCA
AAACCTGGTCCCATGCCAAACCCCTGCAGCGGTGAGGTGGACGCCATGGTGCTGGGGCCTCGTGGGAAGA
CTTATGCTTTCAAGGGCGACTATGTGTGGACTGTAACAGATTCAGGGCCAGGCCCCTTGTTCCAAATATC
TGCCCTTTGGGAGGGGCTTCCTGGAAACCTAGATGCTGCCGTTTACTCTCCCCGGACACGACGGACTCAT
TTCTTCAAGGGAAACAAGGTGTGGCGGTATGTGGATTTCAAGATGTCTCCTGGCTTTCCCATGAAATTCA
ACAGAGTAGAGCCCAACCTGGATGCAGCTCTCTACTGGCCTGTTAATCAAAAGGTGTTCCTGTTTAAGGG
CTCAGGATACTGGCAATGGGATGAACTGGCCAGAACTGACCTTAGCCGCTACCCTAAACCAATCAAGGAA
CTGTTTACTGGAGTGCCAGACCGACCCTCGGCAGCTATGAGCTGGCAAGATGGCCAAGTCTACTTTTTCA
AGGGCAAAGAGTATTGGCGCCTTAACCAGCAACTTCGAGTGGCAAAGGGCTATCCCAGAAATACGACACA
CTGGATGCACTGTGGTTCTCAGACTCCAGACACTAACTCATCAACCGGGGACGTTACTCCTTCAACCACA
GACACAGTCTTGGGTACCACTCCATCAACCATGGGCTCAACCTTGGACATTCCCTCAGCTACAGACTCTG
CCTCCCTCTCATTCTCTGCTAATGTCACCCTGCTAGGGGCCTGA

Translation (527 aa):
MDWQQLWLAFLLPMTVSGRALGPTEKEAVLDYLLQYGYLQKPLEGADDFRLEDITEALRTFQEASGLPIS
GQMDDATRARMKQPRCGLEDPFNQKSLKYLLLGHWRKKNLTFRIFNVPSTLSLPRVRAALHQAFKYWSSV
APLTFREVKAGWADIRLSFHGRQSLYCSNTFDGPGKVLAHADIPELGSIHFDKDELWTEGTYQGVNLRII
AAHEVGHALGLGHSRYTQALMAPVYAGYQPFFKLHPDDVAGIQALYGKRSPETRDEEEETEMLTVSPVTA
KPGPMPNPCSGEVDAMVLGPRGKTYAFKGDYVWTVTDSGPGPLFQISALWEGLPGNLDAAVYSPRTRRTH
FFKGNKVWRYVDFKMSPGFPMKFNRVEPNLDAALYWPVNQKVFLFKGSGYWQWDELARTDLSRYPKPIKE
LFTGVPDRPSAAMSWQDGQVYFFKGKEYWRLNQQLRVAKGYPRNTTHWMHCGSQTPDTNSSTGDVTPSTT
DTVLGTTPSTMGSTLDIPSATDSASLSFSANVTLLGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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