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Report for CCDS24238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24238.1 Public Mus musculus 10 Gli1 23 108 98 CCDS HistoryNCBI Gene:14632Re-query CCDS DB by CCDS ID:24238.1Re-query CCDS DB by GeneID:14632See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026474.4 ENSMUSP00000026474.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026474.4Link to Ensembl Protein Viewer:ENSMUSP00000026474.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026474Re-query CCDS DB by Protein ID:ENSMUSP00000026474
Original member Current member NCBI NM_010296.2 NP_034426.2 Accepted alive Link to Nucleotide Sequence:NM_010296.2Link to Protein Sequence:NP_034426.2Re-query CCDS DB by Nucleotide ID:NM_010296Re-query CCDS DB by Protein ID:NP_034426Link to BLAST:NP_034426.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034426.2 1111 P47806 1111 100% 0 0

Chromosomal Locations for CCDS 24238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127330047 127331800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127332401 127332665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127333568 127333798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127334199 127334363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127335963 127336112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127336412 127336549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127336639 127336728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127337013 127337157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127337390 127337594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127338072 127338164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127338421 127338520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3336 nt):
ATGTTCAATCCAATGACTCCACCACAAGTCAATAGCTATAGTGAGCCATGCTGTCTCCGACCCCTCCACA
GCCAAGGAGTCCCCAGCATGGGAACAGAAGGACTTTCTGGTCTGCCCTTTTGCCACCAAGCCAACTTTAT
GTCAGGGTCCCAGGGTTATGGAGCAGCCAGAGAGACCAGCAGCTGCACTGAAGGATCTCTCTTTCCTCCT
CCTCCTCCTCCTCGGAGTTCAGTCAAATTAACAAAGAAGCGGGCTCTCTCCATCTCGCCCCTTTCTGATG
CCAGCCTCGACCTGCAAACCGTAATCCGGACCTCACCCAGCTCCCTGGTGGCTTTCATCAACTCTCGCTG
TACATCTCCGGGCGGTTCCTACGGCCATCTCTCCATTGGTACCATGAGCCCTTCTTTAGGATTCCCACCT
CAGATGAGTCATCAAAAAGGAACTTCACCTCCCTATGGAGTCCAGCCCTGTGTACCACATGACTCTACTC
GGGGTTCAATGATGCTTCACCCCCAGTCCCGGGGACCACGTGCAACCTGCCAGCTGAAGTCAGAGCTGGA
TATGATGGTTGGCAAGTGCCCGGAGGACCCTTTGGAAGGGGACATGTCTAGCCCCAACTCCACAGGCACA
CAGGATCACCTGTTGGGGATGCTGGATGGGCGGGAGGACCTGGAGAGAGAGGAGAAGCCTGAGCCTGAGT
CTGTGTATGAGACAGACTGCCGCTGGGATGGTTGCAGCCAGGAGTTCGATTCCCAGGAGCAGCTGGTGCA
CCACATCAACAGTGAGCATATCCACGGGGAGCGGAAGGAATTCGTGTGCCATTGGGGAGGTTGCTCCAGG
GAGCTGAGGCCCTTCAAGGCCCAATACATGCTGGTGGTGCACATGCGCAGACACACGGGCGAGAAGCCAC
ACAAGTGCACGTTTGAAGGCTGTCGGAAGTCCTATTCACGCCTTGAAAACCTCAAGACGCACCTTCGGTC
GCACACGGGTGAGAAGCCTTACATGTGTGAGCAAGAAGGTTGCAGCAAGGCCTTTAGCAATGCCAGTGAC
CGCGCCAAGCACCAGAATCGGACCCACTCCAATGAGAAGCCATACGTGTGCAAGCTCCCCGGCTGCACCA
AGCGCTACACAGATCCCAGCTCGCTCCGCAAACACGTGAAGACAGTGCATGGTCCGGATGCCCACGTGAC
CAAGCGGCATCGAGGGGATGGCCCCTTGCCACGGGCTCAGCCCCTCTCCACAGTGGAGCCCAAGCGGGAA
AGGGAAGGAGGATCCGGCAGGGAAGAGAGCAGACTGACTGTGCCCGAGAGTGCCATGCCGCAGCAGAGCC
CCGGAGCGCAGTCCTCTTGCAGCAGCGACCACTCCCCAGCAGGCAGTGCGGCCAACACGGACAGCGGCGT
GGAGATGGCCGGCAACGCCGGGGGCAGCACTGAGGACTTGTCCAGCTTGGATGAAGGACCTTGTGTCTCG
GCCACCGGACTCTCCACGCTTCGCCGCCTGGAGAACCTTAGGCTGGATCAGCTGCATCAGCTCCGGCCCA
TAGGGTCTCGGGGTCTCAAACTGCCCAGCTTAACCCACGCTGGCGCACCTGTGTCTCGCCGTCTGGGCCC
CCCAGTCTCCCTGGACCGCCGCAGCAGCAGCTCCAGCAGCATGAGCTCTGCTTACACAGTCAGCCGCAGG
TCCTCCCTGGCATCCCCTTTCCCGCCGGGAACCCCACCAGAGAATGGGGCATCGTCACTACCTGGCCTCA
CACCTGCTCAGCACTACATGCTCCGTGCCAGATATGCTTCAGCCAGGGGGAGTGGCACCCCGCCCACTGC
AGCTCACAGCCTGGATCGGATGGGAGGTCTTTCTGTTCCTCCTTGGAGAAGCCGAACCGAGTACCCGGGA
TACAACCCAAATGCAGGGGTCACTCGGAGGGCCAGTGACCCAGCCCGGGCTGCTGACCACCCAGCTCCAG
CCAGAGTCCAGCGGTTCAAGAGCCTGGGATGTGTCCACACGCCCCCTAGTGTGGCAACGGGACGGAACTT
CGATCCCCACCACCCTACCTCTGTCTATTCGCCACAGCCCCCCAGCATCACCGAAAATGTTGCCATGGAT
ACTAGGGGGCTACAGGAGGAGCCAGAGGTTGGAACTTCTGTGATGGGCAATGGTCTGAACCCATACATGG
ATTTTTCCTCCACTGATACTCTGGGATATGGGGGACCCGAGGGGACGGCAGCTGAGCCTTATGAAGCTAG
GGGTCCAGGTTCCCTGCCTCTTGGGCCTGGTCCACCAACCAACTATGGCCCTGGCCACTGTGCCCAGCAG
GTCTCCTATCCTGATCCCACCCCAGAAAACTGGGGTGAGTTCCCTTCTCATGCTGGGGTGTACCCTAGCA
ATAAGGCTCCGGGTGCTGCCTATAGCCAGTGTCCTCGACTTGAGCATTATGGACAAGTGCAGGTAAAACC
AGAACAAGGGTGCCCAGTGGGGTCTGACTCCACCGGATTGGCACCCTGCCTCAATGCCCACCCCAGTGAA
GGGTCCCCAGGCCCGCAGCCTCTGTTTTCACATCATCCCCAGCTCCCTCAGCCCCAGTATCCCCAGTCGG
GTCCCTATCCTCAGCCTCCCCATGGTTATCTCTCAACAGAACCCAGGCTTGGCCTCAATTTCAACCCCTC
CTCCTCTCATTCCACAGGACAGCTCAAAGCTCAGCTGGTGTGTAATTACGTTCAGTCGCAGCAGGAATTG
TTGTGGGAGGGAAGAAACCGGGGAGGGCTCCCCAACCAGGAACTCCCATACCAGAGCCCCAAGTTTCTGG
GGGGTTCCCAAGTTAGTCAGAGCCCTGCCAAGACCCCAGCAGCAGCGGCGGCAGCATATGGATCTGGCTT
TGCACCTGCTTCGGCCAATCACAAATCAGGCTCCTATCCTGCCCCTTCACCCTGCCATGAAACTTTCACC
GTGGGAGTAAACAGGCCTTCCCACAGGCCAGCAGCACCACCCCGACTTCTGCCCCCGCTGTCCCCTTGCT
ATGGGCCCCTCAAGGTGGGGGATACCAACCCCAGCTGTGGCCATCCTGAGGTGGGCAGGTTAGGAGCAGG
CCCTGCCTTGTACCCTCCTCCTGAAGGGCAGGTGTGTAACGCTCTGGACTCTCTTGACCTGGACAACACT
CAGCTGGACTTTGTGGCTATCCTAGATGAGGCCCAGGGCCTGAGCCCTCCTCTTTCCCATGAGCAAGGGG
ACAGCTCTAAAAACACCCCATCTCCCTCTGGGCCCCCCAACATGGCAGTGGGTAACATGAGTGTCTTGCT
GGGGTCTCTGCCTGGAGAGACACAATTCCTCAACTCTAGTGCCTAA

Translation (1111 aa):
MFNPMTPPQVNSYSEPCCLRPLHSQGVPSMGTEGLSGLPFCHQANFMSGSQGYGAARETSSCTEGSLFPP
PPPPRSSVKLTKKRALSISPLSDASLDLQTVIRTSPSSLVAFINSRCTSPGGSYGHLSIGTMSPSLGFPP
QMSHQKGTSPPYGVQPCVPHDSTRGSMMLHPQSRGPRATCQLKSELDMMVGKCPEDPLEGDMSSPNSTGT
QDHLLGMLDGREDLEREEKPEPESVYETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSR
ELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEQEGCSKAFSNASD
RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAQPLSTVEPKRE
REGGSGREESRLTVPESAMPQQSPGAQSSCSSDHSPAGSAANTDSGVEMAGNAGGSTEDLSSLDEGPCVS
ATGLSTLRRLENLRLDQLHQLRPIGSRGLKLPSLTHAGAPVSRRLGPPVSLDRRSSSSSSMSSAYTVSRR
SSLASPFPPGTPPENGASSLPGLTPAQHYMLRARYASARGSGTPPTAAHSLDRMGGLSVPPWRSRTEYPG
YNPNAGVTRRASDPARAADHPAPARVQRFKSLGCVHTPPSVATGRNFDPHHPTSVYSPQPPSITENVAMD
TRGLQEEPEVGTSVMGNGLNPYMDFSSTDTLGYGGPEGTAAEPYEARGPGSLPLGPGPPTNYGPGHCAQQ
VSYPDPTPENWGEFPSHAGVYPSNKAPGAAYSQCPRLEHYGQVQVKPEQGCPVGSDSTGLAPCLNAHPSE
GSPGPQPLFSHHPQLPQPQYPQSGPYPQPPHGYLSTEPRLGLNFNPSSSHSTGQLKAQLVCNYVQSQQEL
LWEGRNRGGLPNQELPYQSPKFLGGSQVSQSPAKTPAAAAAAYGSGFAPASANHKSGSYPAPSPCHETFT
VGVNRPSHRPAAPPRLLPPLSPCYGPLKVGDTNPSCGHPEVGRLGAGPALYPPPEGQVCNALDSLDLDNT
QLDFVAILDEAQGLSPPLSHEQGDSSKNTPSPSGPPNMAVGNMSVLLGSLPGETQFLNSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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