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Report for CCDS24028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24028.1 Public Mus musculus 10 Scamp4 23 108 98 CCDS HistoryNCBI Gene:56214Re-query CCDS DB by CCDS ID:24028.1Re-query CCDS DB by GeneID:56214See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079883.11 ENSMUSP00000078808.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079883.11Link to Ensembl Protein Viewer:ENSMUSP00000078808.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079883Re-query CCDS DB by Protein ID:ENSMUSP00000078808
Original member Current member EBI ENSMUST00000180350.2 ENSMUSP00000137003.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180350.2Link to Ensembl Protein Viewer:ENSMUSP00000137003.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180350Re-query CCDS DB by Protein ID:ENSMUSP00000137003
Original member Current member NCBI NM_019575.4 NP_062521.1 Accepted alive Link to Nucleotide Sequence:NM_019575.4Link to Protein Sequence:NP_062521.1Re-query CCDS DB by Nucleotide ID:NM_019575Re-query CCDS DB by Protein ID:NP_062521Link to BLAST:NP_062521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062521.1 230 Q9JKV5 230 100% 0 0

Chromosomal Locations for CCDS 24028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80608844 80608850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80609330 80609458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80609641 80609797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80611028 80611129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80612342 80612459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80614604 80614783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGGCAGGAAAGGAGAACAACTTCCCCCCACTGCCTCCCTTCCTGCCACTGAAGCCCTGCTTCTACCAGG
ACTTCTCTGATGAGATCCCCGTGGAGCACCAGGTGCTGGTGAAGAGGATCTACCGGCTGTGGATGTTTTA
CTGTGCCACTCTGGGTGTGAACCTGGTGGCCTGCCTGGCCTGGTGGATTGCGGGCGGAGCTGGTGCCAAT
TTTGGCCTGGCCTTGCTCTGGCTGGTTCTCTTCACTCCCTGCAGTTATGTGTGCTGGTTCCGGCCTGCAT
ACAAGGCCTTCCGAGCCGACAGCTCCTTTAACTTCATGACATTCTTCTTCATCTTTGGAGCCCAGTTTGT
GCTGACTGTCATTCAGGCCATTGGCTTCTCGGGCTGGGGCGCATGTGGTTGGCTGGCAGCTGTTGGCTTC
TTTGGGACCAGTGTTGGGGCTGCTGTGGTTATGCTGGTCCCGGCCATCCTGTTTTCCTTGTCCGCCCTTG
TGATGGCCGTCACTATCGTGAAGGTGCACAGGATCTACCGTGGGGCTGGTGGAAGCCTCCAGAAGGCACA
GACAGAGTGGAGCGCTGGTACCTGGAGGAACCCACCATCGAGGGAGGCCCAGTTTAACAGTTTCTCTGGG
AACAGCCTGCCTGAGTACCCCACTGTCCCCAGCTACTCGTCCAGCGGAGGCCACTGGCCTTAG

Translation (230 aa):
MAGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWIAGGAGAN
FGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVLTVIQAIGFSGWGACGWLAAVGF
FGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRGAGGSLQKAQTEWSAGTWRNPPSREAQFNSFSG
NSLPEYPTVPSYSSSGGHWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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