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Report for CCDS23996.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23996.2 Reviewed, update pending Mus musculus 10 Med16 23 108 98 CCDS HistoryNCBI Gene:216154Re-query CCDS DB by CCDS ID:23996.2Re-query CCDS DB by GeneID:216154See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 23996.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 23996.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165684.7 ENSMUSP00000129375.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165684.7Link to Ensembl Protein Viewer:ENSMUSP00000129375.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165684Re-query CCDS DB by Protein ID:ENSMUSP00000129375
Original member NCBI NM_198107.2 NP_932775.2 Updated not alive Link to Nucleotide Sequence:NM_198107.2Link to Protein Sequence:NP_932775.2Re-query CCDS DB by Nucleotide ID:NM_198107Re-query CCDS DB by Protein ID:NP_932775
Current member NCBI NM_198107.3 NP_932775.3 Pending alive Link to Nucleotide Sequence:NM_198107.3Link to Protein Sequence:NP_932775.3Re-query CCDS DB by Nucleotide ID:NM_198107Re-query CCDS DB by Protein ID:NP_932775Link to BLAST:NP_932775.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932775.3 828 Q6PGF3 828 100% 0 0

Chromosomal Locations for CCDS 23996.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79895284 79895410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79895627 79895710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79896348 79896564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79896759 79896951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79897565 79897698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79898236 79898446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79898897 79899103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79899201 79899409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79900097 79900252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79902423 79902528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79902997 79903428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79906765 79906934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79907039 79907146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79907491 79907656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79908818 79908895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGGCGGCGTCGGATCCCGGGCGTTGGGGCGAGTGTGGACCGCGGCCGCCGGGCCGACTGGGCGCCCGGG
GCGGACAGGAGCCAGGGACCGTGCTGGGTGCGGTGGGTATGATGGACCTGGCCTATGTGTGCGAATGGGA
GAAGTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCTTGTGCCTGGTCCTGCAGGAACCTCATT
GCCTTCACCACAGACCTACGCAATGATGACCAGGATCTGACACACATGATCCATATCCTAGACACGGAAC
ACCCCTGGGAAGTGCACTCTGTCAGCTCTGGCCACAGCGAGGCCATCACCTGCCTGGAGTGGGACCAGTC
AGGGTCCCGGCTACTGTCTGCTGATGCTGATGGACAGATCAAATGCTGGAGCATGGCTGACCACCTGGCC
AACAGCTGGGAGAGCTCGGTGGGCAGCCAGGTGGAGGGGGACCCCATCGTGGCCCTGTCCTGGCTGCACA
ACGGTGTAAAGCTGGCCCTGCATGTGGAGAAGTCTGGTGCCTCTAGCTTCGGAGAGAAGTTCTCACGTGT
GAAGTTCTCCCCGTCCCTCACGCTGTTCGGTGGCAAGCCAATGGAGGGTTGGATTGCAGTGACAGTCAGT
GGCCTGGTCACTGTGTCCCTTCTGAAGCCCAGCGGGCAGGTGCTGACGTCCACGGAGAGCCTGTGCCGGC
TGCGTGGTAGAGTGGCGCTGGCTGACATCGCCTTCACGGGCGGTGGGAACATTGTGGTGGCTGCTGCAGA
TGGCAGCAGCGCGTCACCCGTGAAGTTCTATAAGGTGTGCGTCAGCGTGGTCAGCGAGAAGTGCCGCATC
GACACGGAGATCCTGCCCTCACTGTTTATGCGCTGCACCACCGACCCCAACCGCAAAGACAGGTTCCCCG
CCATCACACACCTCAAGTTCCTGGCGCGAGACATGTCTGAGCAGGTGCTCCTGTGTGCGTCCAGCCAGAC
CAGCAGCCTGGTGGAATGCTGGTCCCTTCGGAAAGAGGGCCTTCCTGTGAACAATATCTTCCAGCAGATC
TCGCCTGTGGTTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGG
ACCGTGTATCCGCGGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAG
TGACACCCAGTTCTATCCAGGCCTTGGCTTAGCGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGCAC
CGACTGTCCCTGCAGACCATGGCGGTGTTCTACAGCTCAGCCCCGCGCTCGCTGGATGAGCCGGCCCTAA
AGCGCCCACGCACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCT
CGTGGGCATCGATAACCATGGGAAGCTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCCACTGGAG
CCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGGCTATGACTGGTGGG
ACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCG
CCAGAAGCCCGCCCTGCAACAGGTCCTCTCCACTCGGATCCTGGCCATGAAGGCTTCACTGTGCAAGCTG
TCACCCTGCACAGTGGCTCGTGTGTGTGACTACCACACCAAGCTGTTCCTCATGGCCATCACGTCCACCC
TAAAGTCGCTGCTGCGCCCACACTTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGCCTGGCCGAGAT
CTGCGCCAAGATCACCGATGTTGACATCGACAAAGTCATGATCAACCTGAAGACTGAAGAGTTCGTCCTT
GACATGAACACTTTGCAGGCGCTGCAGCAGTTGCTACAGTGGGTGGGAGACTTCGTGCTCTACCTCCTGG
TCAGCCTGCCCAACCAGGGCTCCCCGCTAAGGCCGGGCCACAGCTTCCTCCGAGATGGTACCTCCCTGGG
CATGCTGCGAGAGTTGATGGTTGTCATCCGAATCTGGGGCCTGCTGAAGCCCAGCTGTCTGCCCGTCTAC
ACAGCCACCTCGGACACCCAGGACAGCATGTCCCTGCTCTTCCGACTGCTCACCAAACTGTGGATCTGCT
GCCGTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGCTGCCTGCTGCCTAGCCA
GCTGCTGGTCCCCAACTTGGACTGGCTTCCCGCCAGTGATGGCCTGGTCAGTCGCCTGCAGCCCAAACAG
CCCCTGCGCCTGCGCTTCGGCAGAGCGCCCACTCTGCCCAGCAGCACCTCCACCCTGCAGCTGGACGGCC
TCACCAGGGCCCCTGGCCAGCCCAAGATCGACCACCTCCGGAGGCTACACCTGGGCGCCTACCCCACCGA
GGAGTGCAAAGCCTGCACCAGGTGTGGCTGTGTCACCATGCTGAAGTCTCCCAACAAGACAACCGCTGTG
ACACAGTGGGAACAGCGGTGGATCAAGAATTGCCTGTGTGGTGGGCTGTGGCGGCGAGTGCCTCTCAGCT
GTTCCTGA

Translation (865 aa):
MAASDPGRWGECGPRPPGRLGARGGQEPGTVLGAVGMMDLAYVCEWEKWAKSTYCPSLPLACAWSCRNLI
AFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLEWDQSGSRLLSADADGQIKCWSMADHLA
NSWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVS
GLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEKCRI
DTEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQI
SPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVH
RLSLQTMAVFYSSAPRSLDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHPLE
PKLALQHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKL
SPCTVARVCDYHTKLFLMAITSTLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVL
DMNTLQALQQLLQWVGDFVLYLLVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVY
TATSDTQDSMSLLFRLLTKLWICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLPASDGLVSRLQPKQ
PLRLRFGRAPTLPSSTSTLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKTTAV
TQWEQRWIKNCLCGGLWRRVPLSCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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