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Report for CCDS23779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23779.1 Public Mus musculus 10 Nt5dc1 23 108 98 CCDS HistoryNCBI Gene:319638Re-query CCDS DB by CCDS ID:23779.1Re-query CCDS DB by GeneID:319638See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047885.13 ENSMUSP00000047126.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047885.13Link to Ensembl Protein Viewer:ENSMUSP00000047126.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047885Re-query CCDS DB by Protein ID:ENSMUSP00000047126
Original member Current member NCBI NM_176968.5 NP_795942.2 Accepted alive Link to Nucleotide Sequence:NM_176968.5Link to Protein Sequence:NP_795942.2Re-query CCDS DB by Nucleotide ID:NM_176968Re-query CCDS DB by Protein ID:NP_795942Link to BLAST:NP_795942.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795942.2 467 Q8C5P5-1 467 100% 0 0

Chromosomal Locations for CCDS 23779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34304849 34304979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34310301 34310469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34313589 34313741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34314750 34314868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34322609 34322706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34324288 34324462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34398114 34398198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34399738 34399817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34403651 34403787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34407535 34407606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34411368 34411459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34418361 34418453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCTCAGCACTTCTCCCTGGGCGCCTGCGACGTGGTCGGCTTCGATCTCGACCACACGCTGTGCCGCT
ACAACCTGCCCGAGAGCGCCCGGCTCATTTATAACAGCTTTGCTCAGTTCTTAGTCAAGGAGAAAGGATA
TGATGAGGGGCTGCTCACTCTGACTCCAGAGGACTGGGATTTCTGTTGCAAGGGTTTGGCATTGGATCTG
GAAGATGGGACCTTCATTAAACTTGCAGCTGATGGCACTGTGCTCAGGGCAAGCCACGGCACCAAGATGA
TGACTCCAGAGGCACTGACTGAAGCCTTTGGCAAGAAGGAGTGGAGGCACTGTGTGTCAGACAAACGCTG
TACATCAGACAAGCCCGGTGTGTCCGACATTCCTTGCTGCTCAGGAAAGTGTTATTTCTATGATAACTAC
TTTGACCTGCCGGGGGCTCTTCTGTGTGCCAGAGTGGTGGACTCTTTAACAAAGCAGAACAGAGGTCAAA
AAACATTTGATTTTTGGAAGGATGTAGTTGCTGGTATACAACACAATTTTAAAATGTCAGCCTTTAAGGA
AAATTGTGGATTCTTCTTTCCGGAAATAAAAAGAAATCTAGGCAAATATGTGCACCGCTGTCCTGAGTCT
GTAAGAAAGTGGCTTCGACAGCTGAAGGACGCTGGGAAAATTACTATGTTGATAACTAGTTCTCACAGTG
ATTACTGTAAACTTCTTGGCAGTTACATCCTTGGGGAGGATTTTGCAGACCTTTTTGACATTGTGATTAC
AAACGCATTAAAGCCTGGATTCTTCTCACATTTCCCAAGCCAGAGGCCTTTCTACACACTCGAGAATGAT
GAAGAGAAGGATGAGCTGCCGTCTCTGGATAAACCGGGCTGGTACTCCCAAGGGAACGCTGCCCACCTTT
ATGAGCTTCTGAAGAAAATGACCAGCAAGCCTGAACCCAAGGTCGTTTACTTTGGTGACAGCATGCATTC
AGACATTTTCCCAGCCCATCACTATACTAACTGGGAGACTGTCCTTATTCTCGAGGAGCTTCAGGGGCCA
GAAATGGAAAAGCCTGAGGAAGCAGAGCCTCTGGAGAAAAGAGGAAAATATGAGGCACCAATGGTAAAGC
CTCTAAACACCTTGTCTAATAAGTGGGGCTCATACTTTATTGACTCAGTCTCCGGACGGGGGAGGGCAGA
AGACTCTGTGGTTTATACATGGTCCTCTAAGAGAATCAGCACCTACAGTACGATTGCAATTCCAAACATT
GAATCTATTGCAGAGTTACCCCTGGACTACAAATTTACAAGATTTTCTACAAACAATTCAAAAATGGCTG
GTTACTATCCCTTGGTCCATCATACCTTGGGTTCTCAAGACACAGACAGCAAAATAATATCTACTGAAAA
ATGA

Translation (467 aa):
MAQHFSLGACDVVGFDLDHTLCRYNLPESARLIYNSFAQFLVKEKGYDEGLLTLTPEDWDFCCKGLALDL
EDGTFIKLAADGTVLRASHGTKMMTPEALTEAFGKKEWRHCVSDKRCTSDKPGVSDIPCCSGKCYFYDNY
FDLPGALLCARVVDSLTKQNRGQKTFDFWKDVVAGIQHNFKMSAFKENCGFFFPEIKRNLGKYVHRCPES
VRKWLRQLKDAGKITMLITSSHSDYCKLLGSYILGEDFADLFDIVITNALKPGFFSHFPSQRPFYTLEND
EEKDELPSLDKPGWYSQGNAAHLYELLKKMTSKPEPKVVYFGDSMHSDIFPAHHYTNWETVLILEELQGP
EMEKPEEAEPLEKRGKYEAPMVKPLNTLSNKWGSYFIDSVSGRGRAEDSVVYTWSSKRISTYSTIAIPNI
ESIAELPLDYKFTRFSTNNSKMAGYYPLVHHTLGSQDTDSKIISTEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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