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Report for CCDS23368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23368.1 Public Mus musculus 9 Myo6 23 108 98 CCDS HistoryNCBI Gene:17920Re-query CCDS DB by CCDS ID:23368.1Re-query CCDS DB by GeneID:17920See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035889.14 ENSMUSP00000036181.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035889.14Link to Ensembl Protein Viewer:ENSMUSP00000036181.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035889Re-query CCDS DB by Protein ID:ENSMUSP00000036181
Original member NCBI NM_001039546.2 NP_001034635.2 Updated not alive Link to Nucleotide Sequence:NM_001039546.2Link to Protein Sequence:NP_001034635.2Re-query CCDS DB by Nucleotide ID:NM_001039546Re-query CCDS DB by Protein ID:NP_001034635
Current member NCBI NM_001039546.3 NP_001034635.2 Accepted alive Link to Nucleotide Sequence:NM_001039546.3Link to Protein Sequence:NP_001034635.2Re-query CCDS DB by Nucleotide ID:NM_001039546Re-query CCDS DB by Protein ID:NP_001034635Link to BLAST:NP_001034635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034635.2 1262 Q64331 1262 100% 0 0

Chromosomal Locations for CCDS 23368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 80217641 80217757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80221018 80221087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80226192 80226265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80228858 80228987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80242165 80242270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80245135 80245190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80245640 80245737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80246395 80246559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80251767 80251847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80254880 80255060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80258413 80258557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80260779 80260936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80262274 80262365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80264192 80264264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80266126 80266253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80269627 80269722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80269994 80270167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80273923 80273961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80276308 80276401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80281461 80281591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80281683 80281760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80283455 80283584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80285731 80285821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80286282 80286432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80288008 80288216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80289866 80289944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80292357 80292517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80299146 80299249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80300535 80300666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80303273 80303299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80306960 80307178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 80307672 80307871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3789 nt):
ATGGAAGATGGAAAGCCCGTTTGGGCACCCCACCCCACAGATGGATTTCAGATGGGCAATATTGTGGATA
TTGGCCCTGACAGCTTAACAATTGAACCTTTGAACCAAAAAGGCAAGACATTTTTGGCTCTCATAAACCA
AGTATTTCCTGCAGAAGAGGACAGCAAAAAAGATGTGGAAGATAACTGTTCACTGATGTACTTAAATGAA
GCCACACTCCTCCACAATGTCAAAGTTCGGTACAGTAAAGACAGAATCTATACATATGTGGCCAACATTC
TGATTGCAGTGAATCCATACTTTGATATACCTAAGATATATTCTTCAGATACAATAAAGTCATATCAAGG
AAAATCTCTTGGGACGATGCCACCCCATGTCTTTGCCATTGCTGATAAAGCTTTCCGAGACATGAAGGTG
CTCAAGATGAGCCAGTCTATCATCGTATCTGGAGAATCAGGAGCTGGCAAAACAGAAAATACAAAGTTTG
TTCTAAGATACCTGACAGAATCTTATGGAACAGGTCAAGATATTGATGATAGAATTGTTGAAGCGAATCC
ACTTTTAGAAGCATTTGGAAATGCAAAGACTGTTCGCAACAATAATAGCAGTCGATTTGGAAAATTTGTA
GAAATTCATTTCAATGAAAAGAGTTCGGTTGTTGGAGGATTTGTTTCCCATTACCTTCTAGAGAAGTCTA
GGATCTGTGTTCAAGGCAAAGAGGAGCGGAATTACCATATTTTCTACAGGCTCTGTGCTGGGGCTTCAGA
AGACATCAGGGAGAAGCTTCACTTGAGCTCCCCAGATAATTTCCGGTATTTAAACCGGGGCTGCACTAGA
TTCTTCGCTAACAAAGAAACGGACAAACAGATTTTACAGAACCGAAAAAGTCCTGAGTATGTTAAGGCAG
GTTCCTTGAAGGATCCTCTATTAGACGACCATGGAGATTTTATCAGGATGTGCACAGCCATGAAAAAAAT
TGGTTTGGATGATGAAGAAAAACTTGATCTGTTTCGAGTTGTAGCTGGTGTCCTGCACCTTGGAAATATT
GATTTTGAGGAAGCCGGAAGCACTTCAGGTGGCTGCAATCTGAAGAACAAATCTGCCCCATCCCTGGAAT
ACTGTGCTGAGCTGCTGGGCTTGGACCAAGATGATCTTCGAGTCAGTTTAACCACTCGAGTCATGCTCAC
CACAGCAGGGGGCACCAAAGGAACCGTTATAAAGGTCCCCCTGAAAGTGGAGCAGGCAAACAATGCTCGC
GATGCTCTGGCAAAGACTGTCTATAGCCATCTCTTTGATCACGTGGTGAACAGGGTAAATCAGTGCTTTC
CTTTTGAAACATCTTCTTATTTTATTGGAGTCCTGGATATTGCTGGTTTCGAGTACTTTGAGCACAACAG
CTTCGAGCAATTTTGTATCAACTATTGCAATGAGAAACTCCAACAGTTTTTTAATGAAAGGATCCTGAAG
GAGGAACAAGAACTGTATCAGAAAGAGGGCCTGGGTGTTAATGAAGTCCATTACGTGGACAATCAGGACT
GCATAGATTTAATCGAAGTGAAGTTAGTGGGGATCCTGGATATTCTGGATGAAGAAAATCGTCTTCCCCA
GCCGAGTGACCAGCACTTCACGTCTGTGGTTCACCAGAAGCACAAAGACCACTTCCGGCTCACTATTCCC
AGGAAATCTAAGCTGGCAGTCCACAGGAACCTCAGAGACGATGAAGGCTTTATCATCAGGCACTTTGCAG
GGGCCGTGTGCTACGAGACAACCCAGTTTGTGGAGAAAAATAATGATGCACTACATATGTCTCTTGAATC
CTTGATATGTGAGTCCAGGGATAAGTTTATAAGGGCATTATTTGAGTCATCTACAAATAACAACAAAGAT
ACGAAACAGAAGGCTGGAAAACTTAGCTTCATCAGCGTGGGAAACAAGTTCAAGACACAATTAAATTTGC
TTCTGGATAAACTTCGAAGTACCGGAGCCAGCTTCATCCGCTGCATCAAACCCAACTTAAAGATGACGAG
TCACCACTTCGAAGGCGCCCAGATTCTGTCTCAACTTCAGTGTTCAGGTATGGTGTCTGTGTTGGACCTA
ATGCAAGGGGGTTTCCCTTCAAGAGCCTCGTTCCATGAACTCTATAACATGTACAAGAAGTACATGCCAG
AAAAACTTGCAAGATTGGATCCGAGGTTATTTTGTAAGGCTCTTTTTAAAGCTTTGGGATTAAATGAAGT
TGACTACAAGTTTGGGCTGACAAAAGTATTTTTCAGACCTGGCAAGTTTGCAGAATTTGATCAGATTATG
AAGTCTGACCCTGATCACTTAGCAGAGTTGGTGAAAAGAGTCAACCTGTGGCTAGTCTGTAGTCGCTGGA
AGAAAGTTCAGTGGTGTTCACTGTCAGTCATCAAGCTGAAAAACAAAATAAAATATCGAGCTGAAGCATG
CATTAAAATGCAGAAAACCATCCGAATGTGGCTTTGCAAAAGGAGGCACAAACCACGCATTGACGGCCTG
GTTAAGGTGGGCACACTCAAGAAACGACTCGATAAGTTCAATGAAGTCGTAAGTGCGCTGAAAGATGGGA
AGCCGGAGGTGAACAGACAGATCAAAAATCTTGAAATTTCTATTGATGCTCTAATGGCCAAAATTAAGTC
CACCATGATGACGAGGGAGCAGATACAGAAAGAGTATGATGCACTTGTTAAAAGCTCAGAAGATCTCCTC
AGTGCACTGCAGAAAAAGAAACAGCAAGAGGAGGAGGCCGAGAGGCTGAGGCGCATCCAGGAGGAGATGG
AGAAAGAAAGGAAGAGGCGTGAAGAAGATGAGGAACGTCGGCGGAAGGAGGAAGAGGAGAGGCGGATGAA
ACTTGAGATGGAAGCGAAGAGAAAACAAGAAGAGGAAGAAAGGAAGAAGCGGGAAGATGATGAAAAGCGA
ATCCAGGCTGAGGTGGAGGCACAGCTGGCAAGACAGCGGGAGGAGGAGTCCCAGCAGCAGGCGGTCCTGG
CCCAGGAGTGCAGGGACAGGGAGTTGGCCCTGCGCATCGCCCAGAACGAGTCGGAGCTCATCAGCGATGA
GGCACAGGGTGACATGGCACTCCGAAGAGGTCCTGCGGTGCAAGCTACCAAGGCTGCTGCTGGTACCAAG
AAACATGATCTCAGTAAATGGAAATACGCAGAACTACGCGATACAATCAATACTTCCTGTGACATTGAGC
TCCTGGCAGCTTGCAGAGAAGAGTTTCACAGGAGACTGAAAGTGTATCATGCTTGGAAATCCAAGAACAA
GAAAAGAAACACTGAGACCGAGCAGCGCGCTCCCAAGTCGGTTACTGATTATGATTTTGCACCATTTTTG
AACAATTCACCTCAGCAGAATCCCGCAGCTCAGCTCCCTGCCAGGCAGCAGGAGATTGACATGAAACGAC
AGCAGCGTTTCTTCCGCATCCCCTTCATCCGCCCTGCGGACCAGTACAAAGACCCTCAGAACAAGAAAAA
GGGCTGGTGGTATGCCCATTTTGACGGACCCTGGATTGCTCGGCAGATGGAGCTGCACCCTGACAAGCCA
CCCATCCTTCTTGTAGCTGGCAAGGATGACATGGAGATGTGTGAGCTGAATCTCGAGGAGACGGGTCTGA
CTCGCAAGCGTGGTGCTGAGATCTTGCCCAGACAGTTTGAAGAGATCTGGGAGCGTTGTGGAGGCATCCA
GTACCTTCAGAGCGCCATTGAGAGCAGGCAGGCCCGGCCCACCTATGCTACGGCCATGCTGCAGAACCTG
CTCAAGTAG

Translation (1262 aa):
MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNE
ATLLHNVKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSDTIKSYQGKSLGTMPPHVFAIADKAFRDMKV
LKMSQSIIVSGESGAGKTENTKFVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV
EIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIREKLHLSSPDNFRYLNRGCTR
FFANKETDKQILQNRKSPEYVKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNI
DFEEAGSTSGGCNLKNKSAPSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGTKGTVIKVPLKVEQANNAR
DALAKTVYSHLFDHVVNRVNQCFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILK
EEQELYQKEGLGVNEVHYVDNQDCIDLIEVKLVGILDILDEENRLPQPSDQHFTSVVHQKHKDHFRLTIP
RKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRALFESSTNNNKD
TKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDL
MQGGFPSRASFHELYNMYKKYMPEKLARLDPRLFCKALFKALGLNEVDYKFGLTKVFFRPGKFAEFDQIM
KSDPDHLAELVKRVNLWLVCSRWKKVQWCSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGL
VKVGTLKKRLDKFNEVVSALKDGKPEVNRQIKNLEISIDALMAKIKSTMMTREQIQKEYDALVKSSEDLL
SALQKKKQQEEEAERLRRIQEEMEKERKRREEDEERRRKEEEERRMKLEMEAKRKQEEEERKKREDDEKR
IQAEVEAQLARQREEESQQQAVLAQECRDRELALRIAQNESELISDEAQGDMALRRGPAVQATKAAAGTK
KHDLSKWKYAELRDTINTSCDIELLAACREEFHRRLKVYHAWKSKNKKRNTETEQRAPKSVTDYDFAPFL
NNSPQQNPAAQLPARQQEIDMKRQQRFFRIPFIRPADQYKDPQNKKKGWWYAHFDGPWIARQMELHPDKP
PILLVAGKDDMEMCELNLEETGLTRKRGAEILPRQFEEIWERCGGIQYLQSAIESRQARPTYATAMLQNL
LK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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