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Report for CCDS23314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23314.1 Public Mus musculus 9 Rora 23 108 98 CCDS HistoryNCBI Gene:19883Re-query CCDS DB by CCDS ID:23314.1Re-query CCDS DB by GeneID:19883See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034766.13 ENSMUSP00000034766.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034766.13Link to Ensembl Protein Viewer:ENSMUSP00000034766.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034766Re-query CCDS DB by Protein ID:ENSMUSP00000034766
Original member NCBI NM_013646.2 NP_038674.1 Updated not alive Link to Nucleotide Sequence:NM_013646.2Link to Protein Sequence:NP_038674.1Re-query CCDS DB by Nucleotide ID:NM_013646Re-query CCDS DB by Protein ID:NP_038674
Current member NCBI NM_013646.3 NP_038674.1 Accepted alive Link to Nucleotide Sequence:NM_013646.3Link to Protein Sequence:NP_038674.1Re-query CCDS DB by Nucleotide ID:NM_013646Re-query CCDS DB by Protein ID:NP_038674Link to BLAST:NP_038674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038674.1 523 P51448-1 523 100% 0 0

Chromosomal Locations for CCDS 23314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 68653807 68653972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69196075 69196104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69348132 69348217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69361739 69361880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69364166 69364561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69371215 69371336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69373089 69373221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69374015 69374122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69375385 69375495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69376778 69376890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69378797 69378961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGAGTCAGCTCCGGCAGCCCCCGACCCCGCCGCCAGCGAACCGGGCAGCAGCGGCTCGGAGGCGGCCG
CGGGCTCCAGGGAGACCCCGCTGACCCAGGACACGGGCCGCAAGAGCGAGGCACCGGGCGCGGGGCGCAG
GCAGAGCTATGCGAGCTCCAGCCGAGGTATCTCAGTCACGAAGAAGACACACACATCTCAAATTGAAATT
ATTCCATGCAAGATCTGTGGAGACAAATCGTCAGGAATCCATTATGGTGTCATTACGTGTGAAGGCTGCA
AGGGCTTTTTCAGGAGAAGTCAGCAGAGCAATGCCACCTACTCCTGTCCTCGTCAGAAGAACTGTTTGAT
TGATCGGACCAGCAGAAACCGCTGCCAGCATTGTCGGCTGCAGAAATGCCTGGCCGTGGGGATGTCTCGA
GATGCTGTCAAGTTTGGTCGGATGTCCAAGAAGCAGAGAGACAGCTTGTACGCCGAGGTGCAGAAGCACC
GGATGCAGCAGCAGCAGCGAGACCACCAGCAGCAGCCTGGGGAGGCGGAGCCGCTGACGCCCACCTACAA
CATCTCAGCCAATGGGCTGACGGAACTGCATGATGACCTCAGCACCTATATGGATGGGCACACCCCCGAG
GGCAGCAAGGCCGACTCAGCCGTCAGCAGCTTCTACCTGGACATCCAGCCCTCCCCAGACCAGTCGGGAT
TGGACATCAATGGGATCAAACCCGAACCCATATGTGACTACACACCAGCATCTGGCTTCTTCCCCTACTG
TTCCTTCACCAACGGAGAGACTTCCCCAACCGTGTCCATGGCAGAACTAGAACACCTTGCCCAGAACATA
TCCAAATCCCACCTGGAAACCTGCCAGTACTTGCGGGAAGAGCTCCAGCAGATAACGTGGCAGACCTTCC
TGCAGGAGGAGATTGAAAACTACCAGAACAAGCAGAGAGAGGTGATGTGGCAGCTGTGTGCCATCAAGAT
TACAGAAGCTATCCAGTATGTGGTGGAGTTTGCCAAACGCATTGATGGATTTATGGAGCTGTGTCAAAAT
GATCAAATTGTGCTTCTAAAAGCAGGCTCGCTAGAGGTGGTGTTTATTAGGATGTGCCGTGCCTTTGACT
CTCAGAACAACACCGTGTACTTTGACGGGAAGTATGCGAGCCCCGATGTCTTCAAGTCCCTAGGTTGTGA
AGACTTCATCAGCTTTGTGTTTGAATTTGGGAAGAGTTTGTGTTCTATGCACCTGACCGAAGACGAAATC
GCGTTATTTTCTGCATTCGTACTGATGTCAGCGGATCGCTCGTGGCTTCAGGAAAAGGTAAAAATAGAAA
AGCTGCAACAGAAAATTCAGCTGGCCCTTCAGCACGTCCTACAGAAGAACCACCGAGAAGATGGAATTCT
AACCAAGCTAATATGCAAGGTGTCTACGTTAAGAGCCCTATGTGGACGACATACGGAAAAGCTAATGGCA
TTTAAAGCAATATACCCAGACATTGTGCGACTCCATTTTCCTCCATTATACAAGGAATTGTTCACTTCAG
AATTTGAGCCAGCCATGCAAATCGATGGGTAA

Translation (523 aa):
MESAPAAPDPAASEPGSSGSEAAAGSRETPLTQDTGRKSEAPGAGRRQSYASSSRGISVTKKTHTSQIEI
IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSR
DAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSTYMDGHTPE
GSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNI
SKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQN
DQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI
ALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMA
FKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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