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Report for CCDS23293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23293.1 Public Mus musculus 9 Spg21 23 108 98 CCDS HistoryNCBI Gene:27965Re-query CCDS DB by CCDS ID:23293.1Re-query CCDS DB by GeneID:27965See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034955.7 ENSMUSP00000034955.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034955.7Link to Ensembl Protein Viewer:ENSMUSP00000034955.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034955Re-query CCDS DB by Protein ID:ENSMUSP00000034955
Original member NCBI NM_001357813.1 NP_001344742.1 Updated not alive Link to Nucleotide Sequence:NM_001357813.1Link to Protein Sequence:NP_001344742.1Re-query CCDS DB by Nucleotide ID:NM_001357813Re-query CCDS DB by Protein ID:NP_001344742
Current member NCBI NM_001357813.2 NP_001344742.1 Accepted alive Link to Nucleotide Sequence:NM_001357813.2Link to Protein Sequence:NP_001344742.1Re-query CCDS DB by Nucleotide ID:NM_001357813Re-query CCDS DB by Protein ID:NP_001344742Link to BLAST:NP_001344742.1
Original member NCBI NM_138584.2 NP_613050.1 Updated not alive Link to Nucleotide Sequence:NM_138584.2Link to Protein Sequence:NP_613050.1Re-query CCDS DB by Nucleotide ID:NM_138584Re-query CCDS DB by Protein ID:NP_613050
Current member NCBI NM_138584.3 NP_613050.1 Accepted alive Link to Nucleotide Sequence:NM_138584.3Link to Protein Sequence:NP_613050.1Re-query CCDS DB by Nucleotide ID:NM_138584Re-query CCDS DB by Protein ID:NP_613050Link to BLAST:NP_613050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344742.1 308 Q9CQC8-1 308 100% 0 0
NP_613050.1 308 Q9CQC8-1 308 100% 0 0

Chromosomal Locations for CCDS 23293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65465288 65465350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65468775 65468936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65473638 65473718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65475840 65475985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65480379 65480487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65481861 65481968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65484442 65484582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65486833 65486949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGGAGAGATCAAAGTCTCTCCAGATTATAATTGGTTTAGAAGTACTGTTCCCCTGAAAAAGATAATCG
TGGATGACGATGACAGTAAGATCTGGTCGCTCTACGACGCTGGCCCCAGAAGCATCAGGTGTCCTCTCAT
CTTTCTTCCTCCTGTCAGCGGAACTGCAGATGTGTTTTTCCAGCAGATTCTGGCTTTGACTGGATGGGGT
TACCGGGTTATAGCTTTGCAGTATCCAGTTTATTGGGACCATCTTGAATTCTGTGATGGATTCAGAAAAC
TTTTAGACCACTTACAACTGGATAAAGTTCATCTGTTTGGGGCATCTTTGGGAGGCTTTTTGGCTCAAAA
ATTTGCTGAATACACTCACAAGTCTCCCAGGGTACACTCCCTCATCCTGTGCAATGCCTTCAGTGACACG
TCTATCTTCAACCAAACATGGACTGCAAATAGCTTCTGGTTGATGCCAGCGTTTATGCTCAAGAAAATCG
TTTTGGGGAACTTTTCCTCTGGCCCAGTAGACCCGATGATGGCTGATGCCATTGATTTCATGGTGGACAG
GCTGGAGAGTTTGGGTCAAAGTGAACTGGCTTCAAGGCTAACTCTCAACTGTCAGAATTCCTATGTGGAG
CCACATAAGATCCGGGACATCCCCGTCACCATCATGGATGTGTTTGACCAGAGTGCGCTGTCAACAGAAG
CCAAGGAAGAAATGTACAAACTGTACCCTAATGCGCGGAGAGCCCACCTTAAGACAGGAGGCAATTTTCC
CTACCTGTGCAGGAGTGCAGAGGTCAATCTTTATGTGCAGATACATCTGCTGCAGTTCCATGGAACCAAG
TACGCTGCCATCGATCCGTCAGTGGTCAGTGCGGAGGAGCTAGAGGTGCAGAAAGGCCGCCTCGGCCTCA
GCCAGGAAGAGCCATAG

Translation (308 aa):
MGEIKVSPDYNWFRSTVPLKKIIVDDDDSKIWSLYDAGPRSIRCPLIFLPPVSGTADVFFQQILALTGWG
YRVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNAFSDT
SIFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPMMADAIDFMVDRLESLGQSELASRLTLNCQNSYVE
PHKIRDIPVTIMDVFDQSALSTEAKEEMYKLYPNARRAHLKTGGNFPYLCRSAEVNLYVQIHLLQFHGTK
YAAIDPSVVSAEELEVQKGRLGLSQEEP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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